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Fitness for 5 genes in
Fusobacterium nucleatum SB010
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500 nt
HUW76_01045 and HUW76_01050 are separated by 15 nucleotides
HUW76_01050 and HUW76_01055 are separated by 450 nucleotides
HUW76_01055 and HUW76_01060 are separated by 12 nucleotides
HUW76_01060 and HUW76_01065 are separated by 373 nucleotides
HUW76_01045: HUW76_01045 - single-stranded-DNA-specific exonuclease RecJ, at 192,510 to 194,174
_01045
HUW76_01050: HUW76_01050 - trigger factor, at 194,190 to 195,485
_01050
HUW76_01055: HUW76_01055 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 195,936 to 196,517
_01055
HUW76_01060: HUW76_01060 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 196,530 to 197,804
_01060
HUW76_01065: HUW76_01065 - endopeptidase La, at 198,178 to 200,484
_01065
Group
Condition
HUW76
_01045
HUW76
_01050
HUW76
_01055
HUW76
_01060
HUW76
_01065
mouse
G1M1_D3
-4.1
-6.7
N.D.
-6.5
-2.7
mouse
G1M1_D7
-2.8
-5.4
N.D.
-5.1
-5.1
carbon source complex media
RCM (C)
-4.1
-4.2
N.D.
-4.4
-4.3
mouse
G1M1_D9
-2.2
-4.8
N.D.
-4.6
-5.1
mouse
G1M3_D3
-1.8
-4.4
N.D.
-4.2
-2.6
mouse
G1M1_D4
-1.1
-3.8
N.D.
-3.5
-3.9
mouse
G1M1_D11
-0.9
-3.5
N.D.
-3.3
-4.0
mouse
G1M3_D4
-1.0
-3.7
N.D.
-3.4
-3.5
mouse
G2M5_D4
+0.2
-2.4
N.D.
-2.1
-2.8
mouse
G1M3_D7
+0.5
-2.1
N.D.
-1.9
-2.6
carbon source
butyrate (C)
-0.5
+0.2
N.D.
-0.3
-0.5
time0_primer_test
Time0_primer_test
-0.4
+0.5
N.D.
+0.4
-0.6
time0_primer_test
Time0_primer_test
-0.6
+0.7
N.D.
+0.5
-0.6
time0_primer_test
Time0_primer_test
-0.5
+0.5
N.D.
+0.5
-0.4
time0_primer_test
Time0_primer_test
-0.2
+0.5
N.D.
+0.6
-0.6
carbon source
Rhamnogalacturonan I from potato pectic fiber (C)
+0.0
+0.7
N.D.
+0.2
+0.2
time0_glycerolstock
Time0_glycerolstock
+1.6
+2.1
N.D.
+1.0
+0.5
time0_glycerolstock
Time0_glycerolstock
+1.8
+1.8
N.D.
+1.3
+0.4
time0_glycerolstock
Time0_glycerolstock
+1.9
+1.9
N.D.
+1.2
+0.6
time0_glycerolstock
Time0_glycerolstock
+2.0
+1.9
N.D.
+1.3
+0.4
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