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Cofit
Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS02210 and HMPREF1181_RS02215 are separated by 107 nucleotides
HMPREF1181_RS02215 and HMPREF1181_RS17735 are separated by 120 nucleotides
HMPREF1181_RS17735 and HMPREF1181_RS17190 overlap by 42 nucleotides
HMPREF1181_RS17190 and HMPREF1181_RS02225 are separated by 43 nucleotides
HMPREF1181_RS02210: HMPREF1181_RS02210 - mannonate dehydratase, at 542,264 to 543,436
_RS02210
HMPREF1181_RS02215: HMPREF1181_RS02215 - SDR family oxidoreductase, at 543,544 to 544,353
_RS02215
HMPREF1181_RS17735: HMPREF1181_RS17735 - IS982 family transposase, at 544,474 to 544,944
_RS17735
HMPREF1181_RS17190: HMPREF1181_RS17190 - epoxyqueuosine reductase QueH, at 544,903 to 545,334
_RS17190
HMPREF1181_RS02225: HMPREF1181_RS02225 - serine hydrolase, at 545,378 to 546,871
_RS02225
Group
Condition
HMPREF1181
_RS02210
HMPREF1181
_RS02215
HMPREF1181
_RS17735
HMPREF1181
_RS17190
HMPREF1181
_RS02225
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
-0.2
-0.3
-0.4
+0.2
-0.2
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.1
-0.7
-0.0
-0.1
-0.0
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.1
-0.5
-0.1
+0.3
-0.3
carbon source
D-Mannose 10 mM (C)
-0.2
-0.6
-0.1
+0.6
-0.3
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.2
-0.2
-0.2
+0.2
-0.2
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.2
-0.3
-0.1
-0.2
-0.1
carbon source
D-Mannose 10 mM (C)
-0.2
-0.2
-0.0
+0.2
-0.1
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.1
-0.4
-0.0
+0.4
-0.4
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.0
-0.6
-0.1
+0.3
-0.0
carbon source
D-Glucose 10 mM (C)
-0.2
-0.3
+0.0
+0.3
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.2
+0.5
+0.1
-0.5
-0.2
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.3
+0.3
-0.2
-0.9
+0.3
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.3
-0.0
-0.4
+0.5
-0.1
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.6
-0.1
-0.7
+0.1
+0.1
carbon source
D-Galacturonic Acid 10 mM (C)
+0.1
+0.1
+0.2
-0.4
-0.1
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.1
-0.2
-0.3
+0.2
+0.1
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.1
+0.1
+0.3
-0.5
-0.1
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-0.0
+0.3
+0.2
-0.4
+0.1
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.0
+0.2
+0.3
-0.3
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.1
+0.5
+0.3
-0.7
+0.1
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.1
-0.1
+0.2
+0.2
-0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.2
+0.4
-0.2
-0.1
+0.1
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.5
-0.2
-0.2
+0.3
+0.0
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
+0.0
+0.4
+0.3
-0.3
+0.2
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-0.4
+0.1
+0.2
+0.8
+0.1
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
+0.1
+0.1
+0.3
+0.3
+0.1
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
-0.0
+0.1
+0.4
+0.2
+0.1
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.2
+0.4
+0.1
-0.1
+0.2
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
+0.1
+0.4
+0.5
-0.2
+0.2
carbon source
polygalacturonic 2.5 mg/ml (C)
+0.1
+0.5
+0.2
+0.1
+0.1
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