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Cofit
Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS03350 and HMPREF1181_RS03355 are separated by 31 nucleotides
HMPREF1181_RS03355 and HMPREF1181_RS17225 are separated by 300 nucleotides
HMPREF1181_RS17225 and HMPREF1181_RS03360 are separated by 115 nucleotides
HMPREF1181_RS03360 and HMPREF1181_RS03365 are separated by 57 nucleotides
HMPREF1181_RS03350: HMPREF1181_RS03350 - haloacid dehalogenase-like hydrolase, at 852,952 to 853,929
_RS03350
HMPREF1181_RS03355: HMPREF1181_RS03355 - MFS transporter, at 853,961 to 855,250
_RS03355
HMPREF1181_RS17225: HMPREF1181_RS17225 - IS5/IS1182 family transposase, at 855,551 to 855,754
_RS17225
HMPREF1181_RS03360: HMPREF1181_RS03360 - OmpH family outer membrane protein, at 855,870 to 856,376
_RS03360
HMPREF1181_RS03365: HMPREF1181_RS03365 - OmpH family outer membrane protein, at 856,434 to 856,949
_RS03365
Group
Condition
HMPREF1181
_RS03350
HMPREF1181
_RS03355
HMPREF1181
_RS17225
HMPREF1181
_RS03360
HMPREF1181
_RS03365
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.0
N.D.
N.D.
N.D.
-3.1
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.0
N.D.
N.D.
N.D.
-1.3
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.1
N.D.
N.D.
N.D.
-1.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.2
N.D.
N.D.
N.D.
-1.0
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.0
N.D.
N.D.
N.D.
-0.7
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.1
N.D.
N.D.
N.D.
-0.7
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.5
N.D.
N.D.
N.D.
+0.5
carbon source
Locust bean gum 2.5 mg/ml (C)
-0.5
N.D.
N.D.
N.D.
+0.5
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.9
N.D.
N.D.
N.D.
-0.8
carbon source
D-Maltose 10 mM (C)
-0.2
N.D.
N.D.
N.D.
+0.6
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.2
N.D.
N.D.
N.D.
+0.6
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.3
N.D.
N.D.
N.D.
+0.7
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
-0.2
N.D.
N.D.
N.D.
+0.7
carbon source
B-glucan from yeast 2.5 mg/mL (C)
-0.3
N.D.
N.D.
N.D.
+1.0
carbon source complex media
LB 1 x (C) complex media
+0.4
N.D.
N.D.
N.D.
+0.4
carbon source
Amylose from potato 2.5 mg/mL (C)
+0.1
N.D.
N.D.
N.D.
+0.7
carbon source complex media
LB 1 x (C) complex media
+0.4
N.D.
N.D.
N.D.
+0.5
carbon source
pectate 2.5 mg/mL (C)
-0.1
N.D.
N.D.
N.D.
+1.0
carbon source
NAG 10 mM (C)
+0.1
N.D.
N.D.
N.D.
+0.9
carbon source
Beta-Lactose 10 mM (C)
+0.1
N.D.
N.D.
N.D.
+0.9
carbon source
D-Maltose 10 mM (C)
-0.0
N.D.
N.D.
N.D.
+1.0
carbon source
NAG 10 mM (C)
+0.1
N.D.
N.D.
N.D.
+1.1
carbon source
Beta-Lactose 10 mM (C)
+0.2
N.D.
N.D.
N.D.
+1.5
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-0.0
N.D.
N.D.
N.D.
+1.9
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+1.9
N.D.
N.D.
N.D.
+0.8
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+1.7
N.D.
N.D.
N.D.
+0.9
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+1.8
N.D.
N.D.
N.D.
+1.2
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+1.9
N.D.
N.D.
N.D.
+1.2
carbon source
D-Galacturonic Acid 10 mM (C)
-0.0
N.D.
N.D.
N.D.
+3.3
carbon source
D-Galacturonic Acid 10 mM (C)
-0.0
N.D.
N.D.
N.D.
+3.5
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