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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS15505 and HMPREF1181_RS15510 are separated by 13 nucleotides
HMPREF1181_RS15510 and HMPREF1181_RS15515 are separated by 182 nucleotides
HMPREF1181_RS15515 and HMPREF1181_RS15520 are separated by 49 nucleotides
HMPREF1181_RS15520 and HMPREF1181_RS15525 are separated by 13 nucleotides
HMPREF1181_RS15505: HMPREF1181_RS15505 - DUF452 family protein, at 49,530 to 50,303
_RS15505
HMPREF1181_RS15510: HMPREF1181_RS15510 - malonyl-ACP O-methyltransferase BioC, at 50,317 to 51,276
_RS15510
HMPREF1181_RS15515: HMPREF1181_RS15515 - ATP-dependent dethiobiotin synthetase BioD, at 51,459 to 52,121
_RS15515
HMPREF1181_RS15520: HMPREF1181_RS15520 - glycosyltransferase, at 52,171 to 53,343
_RS15520
HMPREF1181_RS15525: HMPREF1181_RS15525 - ABC transporter permease, at 53,357 to 54,601
_RS15525
Group
Condition
HMPREF1181
_RS15505
HMPREF1181
_RS15510
HMPREF1181
_RS15515
HMPREF1181
_RS15520
HMPREF1181
_RS15525
carbon source complex media
R2A 1 x (C) complex media
N.D.
N.D.
N.D.
-0.4
N.D.
carbon source
Locust bean gum 2.5 mg/ml (C)
N.D.
N.D.
N.D.
-0.4
N.D.
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
N.D.
N.D.
N.D.
-0.4
N.D.
carbon source
D-Galacturonic Acid 10 mM (C)
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
NAG 10 mM (C)
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source complex media
ABB 1 x (C) complex media
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
D-Galacturonic Acid 10 mM (C)
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
D-Mannose 10 mM (C)
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
D-Mannose 10 mM (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
D-Glucose 10 mM (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
D-Glucose 10 mM (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
Beta-Lactose 10 mM (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Inulin from chicory 2.5 mg/mL (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.5
N.D.
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.5
N.D.
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.5
N.D.
carbon source
Inulin from chicory 2.5 mg/ml (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
N.D.
N.D.
N.D.
+0.6
N.D.
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