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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS15280 and HMPREF1181_RS15285 are separated by 98 nucleotides
HMPREF1181_RS15285 and HMPREF1181_RS15290 are separated by 98 nucleotides
HMPREF1181_RS15290 and HMPREF1181_RS15295 are separated by 346 nucleotides
HMPREF1181_RS15295 and HMPREF1181_RS15300 are separated by 31 nucleotides
HMPREF1181_RS15280: HMPREF1181_RS15280 - DUF3868 domain-containing protein, at 260,665 to 262,101
_RS15280
HMPREF1181_RS15285: HMPREF1181_RS15285 - sugar MFS transporter, at 262,200 to 263,414
_RS15285
HMPREF1181_RS15290: HMPREF1181_RS15290 - PorT family protein, at 263,513 to 264,190
_RS15290
HMPREF1181_RS15295: HMPREF1181_RS15295 - ion transporter, at 264,537 to 265,274
_RS15295
HMPREF1181_RS15300: HMPREF1181_RS15300 - PorT family protein, at 265,306 to 265,941
_RS15300
Group
Condition
HMPREF1181
_RS15280
HMPREF1181
_RS15285
HMPREF1181
_RS15290
HMPREF1181
_RS15295
HMPREF1181
_RS15300
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.2
+0.0
-0.4
+0.2
-0.1
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.2
-0.1
+0.2
+0.1
-0.3
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.3
+0.3
-0.2
-0.0
+0.0
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.0
+0.2
+0.0
+0.1
-0.4
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.0
+0.2
-0.3
-0.1
+0.1
carbon source
D-Mannose 10 mM (C)
-0.1
+0.0
+0.3
+0.2
-0.5
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.1
+0.2
+0.3
+0.2
-0.6
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.1
+0.1
+0.1
+0.3
-0.4
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.1
-0.4
+0.6
+0.5
-0.7
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-0.2
+0.7
-0.0
-0.1
-0.3
carbon source
D-Mannose 10 mM (C)
+0.1
+0.2
+0.3
+0.1
-0.6
carbon source
D-Galacturonic Acid 10 mM (C)
+0.1
-0.0
-0.3
+0.1
+0.3
carbon source complex media
Columbia 1 x (C) complex media
+0.1
-0.1
-0.2
+0.3
+0.1
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.0
+0.3
+0.3
+0.1
-0.5
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.2
+0.0
-0.1
+0.3
-0.2
carbon source
D-Glucose 10 mM (C)
+0.0
+0.1
+0.3
+0.1
-0.3
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.1
+0.0
+0.3
+0.2
-0.4
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.0
+0.3
+0.3
+0.2
-0.4
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.1
+0.3
+0.1
+0.3
-0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
-0.1
+0.5
+0.1
+0.2
-0.1
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.0
+0.6
+0.2
-0.3
+0.1
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.2
+0.6
+0.2
-0.4
-0.1
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.3
+0.2
+0.5
+0.3
-0.1
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
-0.1
+0.2
+0.1
+0.2
+0.3
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.1
+0.8
+0.2
+0.0
-0.2
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.1
+0.7
+0.2
+0.0
-0.1
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.1
+0.2
+0.3
+0.1
-0.0
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.1
+0.5
+0.3
-0.0
+0.0
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.1
+0.2
+0.6
+0.3
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
+0.1
+0.7
-0.1
+0.1
+0.6
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