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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS15100 and HMPREF1181_RS15105 are separated by 28 nucleotides
HMPREF1181_RS15105 and HMPREF1181_RS15110 are separated by 15 nucleotides
HMPREF1181_RS15110 and HMPREF1181_RS15115 overlap by 4 nucleotides
HMPREF1181_RS15115 and HMPREF1181_RS15120 are separated by 23 nucleotides
HMPREF1181_RS15100: HMPREF1181_RS15100 - electron transport complex subunit RsxA, at 213,483 to 214,061
_RS15100
HMPREF1181_RS15105: HMPREF1181_RS15105 - electron transport complex subunit E, at 214,090 to 214,674
_RS15105
HMPREF1181_RS15110: HMPREF1181_RS15110 - RnfABCDGE type electron transport complex subunit G, at 214,690 to 215,376
_RS15110
HMPREF1181_RS15115: HMPREF1181_RS15115 - RnfABCDGE type electron transport complex subunit D, at 215,373 to 216,365
_RS15115
HMPREF1181_RS15120: HMPREF1181_RS15120 - electron transport complex subunit RsxC, at 216,389 to 217,726
_RS15120
Group
Condition
HMPREF1181
_RS15100
HMPREF1181
_RS15105
HMPREF1181
_RS15110
HMPREF1181
_RS15115
HMPREF1181
_RS15120
carbon source
polygalacturonic 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.8
-3.2
carbon source
D-Mannose 10 mM (C)
N.D.
N.D.
N.D.
-4.2
-2.5
carbon source
Pectin from apple; filtered 1 mg/mL (C)
N.D.
N.D.
N.D.
-3.6
-3.0
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.6
-3.0
carbon source complex media
LB 1 x (C) complex media
N.D.
N.D.
N.D.
-3.9
-2.7
carbon source
Pectin from apple; filtered 1 mg/mL (C)
N.D.
N.D.
N.D.
-3.6
-2.9
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.5
-3.0
carbon source
Pectin from apple; autoclaved 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.5
-2.9
carbon source
Locust bean gum 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.5
-2.9
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
N.D.
N.D.
N.D.
-3.9
-2.4
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.1
-3.2
carbon source
Polygalacturonic 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-2.8
-3.3
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
N.D.
N.D.
N.D.
-3.8
-2.3
carbon source
pectate 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.6
-2.4
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
N.D.
N.D.
N.D.
-3.3
-2.6
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.2
-2.6
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
N.D.
N.D.
N.D.
-3.2
-2.6
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
N.D.
N.D.
N.D.
-3.1
-2.5
carbon source
Locust bean gum 2.5 mg/ml (C)
N.D.
N.D.
N.D.
-2.8
-2.8
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
N.D.
N.D.
N.D.
-3.0
-2.5
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
N.D.
N.D.
N.D.
-2.7
-2.7
carbon source complex media
marine_broth_2216 1 x (C) complex media
N.D.
N.D.
N.D.
-2.4
-3.0
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
N.D.
N.D.
N.D.
-2.7
-2.7
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
N.D.
N.D.
N.D.
-2.6
-2.6
carbon source complex media
BHI 1 x (C) complex media
N.D.
N.D.
N.D.
-3.2
-2.0
carbon source complex media
LB 1 x (C) complex media
N.D.
N.D.
N.D.
-2.8
-2.3
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
N.D.
N.D.
N.D.
-3.3
-1.8
carbon source complex media
Brucella 1 x (C) complex media
N.D.
N.D.
N.D.
-3.1
-1.9
carbon source
D-Glucose 10 mM (C)
N.D.
N.D.
N.D.
-2.8
-2.0
carbon source complex media
marine_broth_2216 1 x (C) complex media
N.D.
N.D.
N.D.
-3.2
-1.6
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