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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS12990 and HMPREF1181_RS12995 are separated by 13 nucleotides
HMPREF1181_RS12995 and HMPREF1181_RS13000 are separated by 65 nucleotides
HMPREF1181_RS13000 and HMPREF1181_RS13005 are separated by 85 nucleotides
HMPREF1181_RS13005 and HMPREF1181_RS13010 are separated by 67 nucleotides
HMPREF1181_RS12990: HMPREF1181_RS12990 - cation:proton antiporter, at 94,599 to 96,845
_RS12990
HMPREF1181_RS12995: HMPREF1181_RS12995 - 6-phosphofructokinase, at 96,859 to 97,842
_RS12995
HMPREF1181_RS13000: HMPREF1181_RS13000 - RNA polymerase sigma factor, at 97,908 to 98,363
_RS13000
HMPREF1181_RS13005: HMPREF1181_RS13005 - Hsp20/alpha crystallin family protein, at 98,449 to 98,877
_RS13005
HMPREF1181_RS13010: HMPREF1181_RS13010 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 98,945 to 99,694
_RS13010
Group
Condition
HMPREF1181
_RS12990
HMPREF1181
_RS12995
HMPREF1181
_RS13000
HMPREF1181
_RS13005
HMPREF1181
_RS13010
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-0.0
-0.7
-0.8
-0.8
-0.3
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
-0.1
-0.3
-0.0
-0.5
-1.0
carbon source
D-Mannose 10 mM (C)
-0.2
-0.1
-0.4
-0.6
-0.1
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.3
-0.5
-0.1
+0.2
-0.4
carbon source complex media
marine_broth_2216 1 x (C) complex media
+0.1
-0.1
+0.2
-0.3
-0.9
carbon source
D-Glucose 10 mM (C)
-0.1
+0.0
-0.1
-0.3
-0.5
carbon source
D-Galacturonic Acid 10 mM (C)
-0.2
-0.0
-0.2
-0.5
-0.2
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.2
-0.2
-0.0
-0.6
+0.1
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
-0.5
+0.0
-0.0
-0.7
+0.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
-0.1
-0.1
+0.2
-0.4
-0.5
carbon source
Beta-Lactose 10 mM (C)
+0.0
+0.1
-0.1
-0.6
-0.4
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.3
-0.2
+0.4
-0.3
-0.5
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.3
-0.1
-0.1
-0.6
+0.3
carbon source complex media
GAM 1 x (C) complex media
-0.1
+0.1
-0.2
-0.6
+0.1
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.3
-0.1
-1.0
+0.3
-0.0
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.0
+0.1
+0.2
-0.3
-0.5
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.2
+0.4
-0.1
-0.8
-0.2
carbon source
D-Maltose 10 mM (C)
+0.0
+0.1
-0.1
-0.7
+0.3
carbon source
NAG 10 mM (C)
-0.2
+0.1
-0.1
-0.4
+0.2
carbon source
B-glucan from yeast 2.5 mg/mL (C)
+0.2
+0.3
+0.1
-0.3
-0.6
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.2
+0.1
+0.2
+0.2
-1.0
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.1
+0.2
+0.1
-1.2
+0.6
carbon source
D-Galacturonic Acid 10 mM (C)
+0.1
+0.2
+0.1
-0.5
+0.2
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.1
+0.0
+0.3
-0.4
+0.4
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.3
+0.2
+0.1
-0.4
+0.2
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.2
-0.1
+0.6
-0.1
+0.3
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
+0.2
+0.1
+0.2
+0.7
-0.2
carbon source
Galactan from Potato 2.5 mg/mL (C)
+0.1
+0.1
+0.2
+0.1
+0.5
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.3
+0.4
+0.1
+0.7
+0.4
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.2
-0.1
+0.5
+0.8
+0.5
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