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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS12480 and HMPREF1181_RS12485 are separated by 66 nucleotides
HMPREF1181_RS12485 and HMPREF1181_RS12490 are separated by 39 nucleotides
HMPREF1181_RS12490 and HMPREF1181_RS12495 are separated by 4 nucleotides
HMPREF1181_RS12495 and HMPREF1181_RS12500 are separated by 314 nucleotides
HMPREF1181_RS12480: HMPREF1181_RS12480 - ABC transporter ATP-binding protein, at 497,836 to 498,582
_RS12480
HMPREF1181_RS12485: HMPREF1181_RS12485 - ABC transporter permease, at 498,649 to 499,869
_RS12485
HMPREF1181_RS12490: HMPREF1181_RS12490 - histidine kinase, at 499,909 to 500,973
_RS12490
HMPREF1181_RS12495: HMPREF1181_RS12495 - response regulator transcription factor, at 500,978 to 501,679
_RS12495
HMPREF1181_RS12500: HMPREF1181_RS12500 - hypothetical protein, at 501,994 to 502,248
_RS12500
Group
Condition
HMPREF1181
_RS12480
HMPREF1181
_RS12485
HMPREF1181
_RS12490
HMPREF1181
_RS12495
HMPREF1181
_RS12500
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
-0.6
-0.1
-0.4
-0.4
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.8
+0.3
-0.4
-0.5
-0.0
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
-0.4
-0.2
-0.2
-0.5
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.7
+0.3
+0.1
-0.4
-0.6
carbon source
pectate 2.5 mg/mL (C)
-0.2
-0.1
-0.2
-0.3
-0.3
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-1.5
-0.5
-0.0
-0.2
+1.2
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-0.3
-0.1
-0.2
+0.4
-0.8
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
+0.1
-0.1
-0.3
-0.3
-0.5
carbon source complex media
Brucella 1 x (C) complex media
-0.5
-0.1
+0.1
-0.3
-0.3
carbon source complex media
ABB 1 x (C) complex media
-0.6
-0.2
+0.1
-0.2
-0.1
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.2
-0.7
+0.2
+0.1
-0.3
carbon source complex media
MRS 1 x (C) complex media
-0.4
-0.3
+0.1
-0.1
+0.3
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.5
-0.2
-0.1
-0.1
+0.5
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.3
-0.6
+0.2
+0.0
+0.3
carbon source
Galactan from Potato 2.5 mg/ml (C)
+0.6
+0.0
+0.0
-0.3
-0.3
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.2
-0.3
+0.4
-0.3
+0.8
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.1
-0.0
-0.3
-0.1
+1.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.8
-0.1
-0.0
+0.2
+0.2
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.6
+0.1
-0.1
-0.1
+0.5
carbon source
Beta-Lactose 10 mM (C)
+0.3
-0.0
+0.9
-0.0
+0.2
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.7
+0.0
+0.3
+0.3
+0.3
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.8
+0.2
+0.4
-0.1
+0.4
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.8
-0.2
+0.1
+0.4
+0.6
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.3
-0.1
+0.1
+0.7
+0.9
carbon source
D-Mannose 10 mM (C)
+1.1
+0.2
+0.1
+0.3
+0.4
carbon source
D-Mannose 10 mM (C)
+0.9
+0.3
+0.2
+0.3
+0.4
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.0
-0.1
+1.1
+1.1
+0.1
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.7
+0.2
+0.3
+0.4
+0.6
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+1.1
-0.1
+0.4
+0.6
+0.5
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.4
+0.2
+0.6
+0.1
+1.3
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