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Homologs
Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS12375 and HMPREF1181_RS12380 are separated by 2 nucleotides
HMPREF1181_RS12380 and HMPREF1181_RS12385 are separated by 31 nucleotides
HMPREF1181_RS12385 and HMPREF1181_RS12390 overlap by 8 nucleotides
HMPREF1181_RS12390 and HMPREF1181_RS12395 are separated by 55 nucleotides
HMPREF1181_RS12375: HMPREF1181_RS12375 - efflux RND transporter permease subunit, at 472,674 to 475,709
_RS12375
HMPREF1181_RS12380: HMPREF1181_RS12380 - TolC family protein, at 475,712 to 476,995
_RS12380
HMPREF1181_RS12385: HMPREF1181_RS12385 - histidine kinase, at 477,027 to 478,052
_RS12385
HMPREF1181_RS12390: HMPREF1181_RS12390 - response regulator transcription factor, at 478,045 to 478,818
_RS12390
HMPREF1181_RS12395: HMPREF1181_RS12395 - DMT family transporter, at 478,874 to 479,785
_RS12395
Group
Condition
HMPREF1181
_RS12375
HMPREF1181
_RS12380
HMPREF1181
_RS12385
HMPREF1181
_RS12390
HMPREF1181
_RS12395
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
-0.4
-0.5
-0.0
-1.2
+0.3
carbon source
Locust bean gum 2.5 mg/ml (C)
-0.1
-0.2
-0.7
+0.0
+0.2
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.2
+0.0
-0.2
-0.8
+0.0
carbon source complex media
R2A 1 x (C) complex media
-0.2
+0.3
-0.1
-0.2
-0.3
carbon source
Amylose from potato 2.5 mg/ml (C)
+0.2
-0.1
+0.3
-0.5
-0.0
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
+0.1
+0.1
+0.4
-0.7
-0.0
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.3
+0.0
+0.3
-0.6
+0.1
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.5
-0.1
-0.1
-0.7
+0.6
carbon source
Glycogen from bovine liver 2.5 mg/mL (C)
+0.2
-0.1
+0.3
-0.3
+0.1
carbon source
D-Galacturonic Acid 10 mM (C)
+0.0
+0.3
+0.1
-0.5
+0.3
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
+0.1
+0.2
+0.4
-0.3
-0.1
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.2
+0.3
-0.1
-0.3
+0.1
carbon source
Pectin from apple; autoclaved 2.5 mg/mL (C)
+0.2
+0.0
+0.2
-0.3
+0.3
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.1
-0.3
+0.5
-0.0
+0.2
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.6
-0.2
+0.2
+0.1
-0.1
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
+0.4
-0.2
+0.1
+0.0
+0.3
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.4
-0.1
+0.3
-0.2
+0.3
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.4
-0.0
+0.7
-0.4
+0.1
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.7
-0.1
+0.7
-0.8
+0.4
carbon source complex media
marine_broth_2216 1 x (C) complex media
+0.2
-0.3
+0.2
+0.2
+0.5
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.0
+0.3
-0.0
+0.1
+0.5
carbon source
D-Mannose 10 mM (C)
+0.4
-0.1
-0.2
+0.1
+0.6
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.3
-0.1
+0.2
+0.1
+0.4
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.2
-0.2
+0.4
+0.2
+0.3
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.2
+0.1
+0.5
-0.1
+0.3
carbon source
D-Mannose 10 mM (C)
+0.5
+0.1
-0.2
+0.0
+0.6
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.5
-0.3
-0.1
+0.2
+0.7
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.4
+0.1
+0.1
+0.1
+0.6
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.4
-0.1
+0.1
+0.4
+0.5
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.1
-0.4
+1.2
+0.9
+0.0
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