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Protein
Homologs
Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS11580 and HMPREF1181_RS11585 are separated by 19 nucleotides
HMPREF1181_RS11585 and HMPREF1181_RS11590 are separated by 516 nucleotides
HMPREF1181_RS11590 and HMPREF1181_RS11595 are separated by 4 nucleotides
HMPREF1181_RS11595 and HMPREF1181_RS11600 overlap by 8 nucleotides
HMPREF1181_RS11580: HMPREF1181_RS11580 - site-specific integrase, at 316,868 to 318,097
_RS11580
HMPREF1181_RS11585: HMPREF1181_RS11585 - site-specific integrase, at 318,117 to 319,334
_RS11585
HMPREF1181_RS11590: HMPREF1181_RS11590 - DEAD/DEAH box helicase family protein, at 319,851 to 322,751
_RS11590
HMPREF1181_RS11595: HMPREF1181_RS11595 - DUF3307 domain-containing protein, at 322,756 to 323,445
_RS11595
HMPREF1181_RS11600: HMPREF1181_RS11600 - RNA polymerase subunit sigma-70, at 323,438 to 324,145
_RS11600
Group
Condition
HMPREF1181
_RS11580
HMPREF1181
_RS11585
HMPREF1181
_RS11590
HMPREF1181
_RS11595
HMPREF1181
_RS11600
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.8
+0.2
-0.4
+0.1
-1.1
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-0.8
-0.1
-0.1
-0.3
+0.0
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-1.5
+0.4
+0.1
-0.7
+0.8
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.1
-1.0
-0.1
-0.1
+0.1
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-0.4
+0.3
-0.2
-0.5
-0.2
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
-0.2
+0.3
-0.1
-0.4
-0.4
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.4
+0.2
+0.0
-0.3
-0.3
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
-1.0
+0.3
+0.3
-0.3
+0.2
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.6
+0.1
+0.0
-0.2
+0.4
carbon source complex media
R2A 1 x (C) complex media
+0.4
+0.3
-0.2
-0.0
-0.5
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.3
-0.7
-0.1
+0.1
+0.4
carbon source
NAG 10 mM (C)
+0.4
-0.2
-0.1
+0.2
-0.4
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.4
-0.5
-0.1
+0.3
-0.1
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.9
+0.3
+0.3
+0.1
+0.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.3
-0.1
+0.3
-0.0
+0.5
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.7
+0.1
+0.1
+0.2
-0.7
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.5
-0.7
+0.2
-0.0
+0.5
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.3
-0.4
+0.3
+0.0
+0.3
carbon source
D-Mannose 10 mM (C)
+1.0
-0.7
+0.1
+0.2
+0.2
carbon source
D-Xylose 10 mM (C)
+0.7
-0.2
+0.0
+0.2
+0.1
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.6
-0.2
+0.2
-0.1
+0.3
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.6
-0.3
+0.2
+0.3
+0.1
carbon source
Inulin from chicory 2.5 mg/mL (C)
+1.1
-0.6
-0.0
+0.2
+0.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.3
-0.1
+0.2
+0.2
+0.5
carbon source
D-Glucose 10 mM (C)
+0.9
-0.3
+0.1
+0.2
+0.1
carbon source
D-Mannose 10 mM (C)
+0.9
-0.7
+0.3
+0.4
+0.3
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.0
+0.5
+0.3
-0.2
+0.4
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.8
-0.6
-0.1
+0.7
+0.4
carbon source
Amylose from potato 2.5 mg/mL (C)
+0.4
+0.1
+0.2
+0.0
+0.7
carbon source
Locust bean gum 2.5 mg/mL (C)
+1.0
-0.1
+0.1
+0.4
+0.5
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