Fitness for 5 genes in Bacteroides stercoris CC31F

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500 ntHMPREF1181_RS11580 and HMPREF1181_RS11585 are separated by 19 nucleotidesHMPREF1181_RS11585 and HMPREF1181_RS11590 are separated by 516 nucleotidesHMPREF1181_RS11590 and HMPREF1181_RS11595 are separated by 4 nucleotidesHMPREF1181_RS11595 and HMPREF1181_RS11600 overlap by 8 nucleotides HMPREF1181_RS11580: HMPREF1181_RS11580 - site-specific integrase, at 316,868 to 318,097 _RS11580 HMPREF1181_RS11585: HMPREF1181_RS11585 - site-specific integrase, at 318,117 to 319,334 _RS11585 HMPREF1181_RS11590: HMPREF1181_RS11590 - DEAD/DEAH box helicase family protein, at 319,851 to 322,751 _RS11590 HMPREF1181_RS11595: HMPREF1181_RS11595 - DUF3307 domain-containing protein, at 322,756 to 323,445 _RS11595 HMPREF1181_RS11600: HMPREF1181_RS11600 - RNA polymerase subunit sigma-70, at 323,438 to 324,145 _RS11600
Group Condition HMPREF1181_RS11580 HMPREF1181_RS11585 HMPREF1181_RS11590 HMPREF1181_RS11595 HMPREF1181_RS11600
carbon source Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C) -0.8 +0.2 -0.4 +0.1 -1.1
carbon source complex media Peptone 2.5 mg/mL (C) complex media -0.8 -0.1 -0.1 -0.3 +0.0
carbon source complex media Peptone 2.5 mg/mL (C) complex media -1.5 +0.4 +0.1 -0.7 +0.8
carbon source Chitin from shrimp shells 2.5 mg/ml (C) +0.1 -1.0 -0.1 -0.1 +0.1
carbon source Pectic galactan from potato 2.5 mg/ml (C) -0.4 +0.3 -0.2 -0.5 -0.2
carbon source Pectic galactan from potato 2.5 mg/mL (C) -0.2 +0.3 -0.1 -0.4 -0.4
carbon source Pectin from apple; filtered 1 mg/mL (C) -0.4 +0.2 +0.0 -0.3 -0.3
carbon source Mucin from porcine stomach type II 2.5 mg/ml (C) -1.0 +0.3 +0.3 -0.3 +0.2
carbon source Amylose from potato 2.5 mg/ml (C) -0.6 +0.1 +0.0 -0.2 +0.4
carbon source complex media R2A 1 x (C) complex media +0.4 +0.3 -0.2 -0.0 -0.5
carbon source a-Cyclodextrin 2.5 mg/mL (C) +0.3 -0.7 -0.1 +0.1 +0.4
carbon source NAG 10 mM (C) +0.4 -0.2 -0.1 +0.2 -0.4
carbon source Locust bean gum 2.5 mg/ml (C) +0.4 -0.5 -0.1 +0.3 -0.1
carbon source complex media marine_broth_2216 1 x (C) complex media -0.9 +0.3 +0.3 +0.1 +0.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -0.3 -0.1 +0.3 -0.0 +0.5
carbon source Glucomannan (konjac) 2.5 mg/ml (C) +0.7 +0.1 +0.1 +0.2 -0.7
carbon source Dextrin from potato starch 2.5 mg/ml (C) +0.5 -0.7 +0.2 -0.0 +0.5
carbon source Inulin from chicory 2.5 mg/ml (C) +0.3 -0.4 +0.3 +0.0 +0.3
carbon source D-Mannose 10 mM (C) +1.0 -0.7 +0.1 +0.2 +0.2
carbon source D-Xylose 10 mM (C) +0.7 -0.2 +0.0 +0.2 +0.1
carbon source beta-Cyclodextrin 2.5 mg/mL (C) +0.6 -0.2 +0.2 -0.1 +0.3
carbon source Dextrin from potato starch 2.5 mg/mL (C) +0.6 -0.3 +0.2 +0.3 +0.1
carbon source Inulin from chicory 2.5 mg/mL (C) +1.1 -0.6 -0.0 +0.2 +0.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.3 -0.1 +0.2 +0.2 +0.5
carbon source D-Glucose 10 mM (C) +0.9 -0.3 +0.1 +0.2 +0.1
carbon source D-Mannose 10 mM (C) +0.9 -0.7 +0.3 +0.4 +0.3
carbon source complex media Yeast Extract 2.5 mg/mL (C) complex media +0.0 +0.5 +0.3 -0.2 +0.4
carbon source Arabinoxylan (Rye Flour) 2.5 mg/mL (C) +0.8 -0.6 -0.1 +0.7 +0.4
carbon source Amylose from potato 2.5 mg/mL (C) +0.4 +0.1 +0.2 +0.0 +0.7
carbon source Locust bean gum 2.5 mg/mL (C) +1.0 -0.1 +0.1 +0.4 +0.5
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