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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS11405 and HMPREF1181_RS11410 are separated by 407 nucleotides
HMPREF1181_RS11410 and HMPREF1181_RS11415 are separated by 97 nucleotides
HMPREF1181_RS11415 and HMPREF1181_RS11420 are separated by 26 nucleotides
HMPREF1181_RS11420 and HMPREF1181_RS11425 are separated by 537 nucleotides
HMPREF1181_RS11405: HMPREF1181_RS11405 - AAA family ATPase, at 283,168 to 285,231
_RS11405
HMPREF1181_RS11410: HMPREF1181_RS11410 - dihydrofolate reductase family protein, at 285,639 to 286,157
_RS11410
HMPREF1181_RS11415: HMPREF1181_RS11415 - type IA DNA topoisomerase, at 286,255 to 288,342
_RS11415
HMPREF1181_RS11420: HMPREF1181_RS11420 - DUF3945 domain-containing protein, at 288,369 to 289,691
_RS11420
HMPREF1181_RS11425: HMPREF1181_RS11425 - hypothetical protein, at 290,229 to 290,936
_RS11425
Group
Condition
HMPREF1181
_RS11405
HMPREF1181
_RS11410
HMPREF1181
_RS11415
HMPREF1181
_RS11420
HMPREF1181
_RS11425
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-0.2
-0.8
-0.1
-0.3
-0.0
carbon source
D-Galacturonic Acid 10 mM (C)
-0.2
+0.1
-0.2
-0.3
-0.1
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.0
-0.4
+0.0
+0.2
-0.5
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.1
-0.8
+0.2
-0.0
-0.0
carbon source
Amylose from potato 2.5 mg/mL (C)
+0.2
-0.5
-0.1
-0.1
-0.1
carbon source
pectate 2.5 mg/mL (C)
-0.3
-0.1
+0.1
-0.3
+0.2
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
-0.2
+0.1
+0.0
-0.5
+0.3
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-0.2
-0.3
-0.1
+0.3
-0.0
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.2
-0.4
+0.1
+0.2
+0.0
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.1
-0.0
-0.1
+0.5
-0.6
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.1
-0.6
+0.1
+0.7
-0.5
carbon source
D-Glucose 10 mM (C)
+0.2
-0.2
+0.1
+0.2
-0.4
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.2
-0.2
-0.2
+0.6
-0.5
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
-0.4
+0.2
+0.0
-0.2
+0.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.1
-0.3
+0.1
+0.4
-0.3
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.2
-0.2
+0.1
+0.4
-0.6
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.2
-0.3
+0.0
+0.8
-0.8
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.1
-0.0
-0.1
+0.4
-0.5
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.1
+0.2
+0.3
-0.3
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.1
+0.1
-0.4
+0.2
+0.3
carbon source
Levan - from Erwinia herbicola 2.5 mg/ml (C)
-0.0
-0.2
-0.0
+0.6
-0.1
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
-0.3
+0.2
+0.1
+0.2
+0.1
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.1
+0.1
-0.2
+0.8
-0.2
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.1
-0.6
-0.2
+0.9
+0.3
carbon source
D-Mannose 10 mM (C)
+0.2
-0.2
+0.0
+0.7
-0.2
carbon source
D-Mannose 10 mM (C)
+0.1
+0.0
+0.0
+0.7
-0.2
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.0
+0.3
+0.2
+0.4
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.1
-0.2
+0.1
+0.8
+0.2
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.4
+0.2
+1.0
-0.7
+0.4
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-0.3
+0.2
-0.6
+1.9
+0.6
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