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Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS10545 and HMPREF1181_RS10550 are separated by 24 nucleotides
HMPREF1181_RS10550 and HMPREF1181_RS10555 are separated by 408 nucleotides
HMPREF1181_RS10555 and HMPREF1181_RS10560 are separated by 40 nucleotides
HMPREF1181_RS10560 and HMPREF1181_RS10565 are separated by 764 nucleotides
HMPREF1181_RS10545: HMPREF1181_RS10545 - phosphotransferase, at 83,284 to 84,714
_RS10545
HMPREF1181_RS10550: HMPREF1181_RS10550 - nucleotidyltransferase family protein, at 84,739 to 85,473
_RS10550
HMPREF1181_RS10555: HMPREF1181_RS10555 - TonB-dependent receptor, at 85,882 to 87,954
_RS10555
HMPREF1181_RS10560: HMPREF1181_RS10560 - sirohydrochlorin cobaltochelatase, at 87,995 to 89,194
_RS10560
HMPREF1181_RS10565: HMPREF1181_RS10565 - TonB-dependent receptor, at 89,959 to 92,193
_RS10565
Group
Condition
HMPREF1181
_RS10545
HMPREF1181
_RS10550
HMPREF1181
_RS10555
HMPREF1181
_RS10560
HMPREF1181
_RS10565
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.1
-5.1
+0.0
+0.1
-0.2
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-0.5
-1.1
+0.0
-0.6
-2.9
carbon source
Locust bean gum 2.5 mg/mL (C)
-0.8
-0.8
+0.5
+0.3
-3.5
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.1
-2.1
+0.2
-0.2
-1.8
carbon source
Locust bean gum 2.5 mg/ml (C)
-0.3
-0.5
+0.3
+0.3
-3.7
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.4
-0.0
-0.2
-0.6
-2.6
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.1
-1.0
+0.3
+0.1
-2.4
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.2
-0.4
+0.2
+0.1
-2.8
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.0
+0.1
+0.2
+0.1
-2.9
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.0
+0.5
+0.3
-0.1
-3.0
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.2
+0.7
-0.1
-0.6
-2.0
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.3
+0.5
+0.0
-0.3
-1.9
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
-0.2
+1.1
-0.1
-0.2
-2.4
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
+0.0
-0.7
+0.1
+0.1
-1.5
carbon source
D-Mannose 10 mM (C)
+0.1
+0.5
-0.1
-0.3
-1.9
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.2
-1.6
-0.1
-0.1
-0.3
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.2
+0.2
-0.1
-0.1
-1.6
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
+0.1
-0.3
+0.2
+0.1
-1.8
carbon source
D-Xylose 10 mM (C)
+0.1
-0.2
+0.1
+0.1
-1.7
carbon source
D-Mannose 10 mM (C)
+0.1
+0.7
-0.2
-0.4
-1.8
carbon source
Levan - from Erwinia herbicola 2.5 mg/mL (C)
+0.1
-0.4
+0.2
+0.1
-1.6
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.1
-0.2
+0.5
+0.3
-1.8
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.3
+0.7
+0.2
+0.2
-2.7
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
+0.3
-1.9
+0.1
+0.3
-0.1
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
+0.4
+0.0
+0.3
+0.5
-2.3
carbon source
Lentilan from mushroom 2.5 mg/ml (C)
+0.3
-0.5
+0.2
+0.1
-1.1
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
+0.2
+0.2
+0.2
+0.2
-1.5
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.4
+0.3
-0.2
-0.3
-1.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
+0.5
-0.7
+0.1
+0.5
-1.2
carbon source
Galactan from Potato 2.5 mg/ml (C)
+0.4
+0.4
+0.1
+0.3
-1.2
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