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Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS10525 and HMPREF1181_RS10530 are separated by 206 nucleotides
HMPREF1181_RS10530 and HMPREF1181_RS10535 are separated by 190 nucleotides
HMPREF1181_RS10535 and HMPREF1181_RS10540 are separated by 14 nucleotides
HMPREF1181_RS10540 and HMPREF1181_RS10545 are separated by 113 nucleotides
HMPREF1181_RS10525: HMPREF1181_RS10525 - efflux RND transporter periplasmic adaptor subunit, at 77,361 to 78,347
_RS10525
HMPREF1181_RS10530: HMPREF1181_RS10530 - ABC transporter permease, at 78,554 to 81,019
_RS10530
HMPREF1181_RS10535: HMPREF1181_RS10535 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 81,210 to 81,779
_RS10535
HMPREF1181_RS10540: HMPREF1181_RS10540 - cobyrinate a,c-diamide synthase, at 81,794 to 83,170
_RS10540
HMPREF1181_RS10545: HMPREF1181_RS10545 - phosphotransferase, at 83,284 to 84,714
_RS10545
Group
Condition
HMPREF1181
_RS10525
HMPREF1181
_RS10530
HMPREF1181
_RS10535
HMPREF1181
_RS10540
HMPREF1181
_RS10545
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.1
-0.1
-1.3
-3.8
-0.8
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
-0.3
+0.3
-3.2
-2.2
-0.2
carbon source
D-Mannose 10 mM (C)
-0.4
+0.1
-2.3
-2.5
+0.1
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
-0.5
-0.1
-3.6
-1.0
+0.4
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.8
+0.2
-1.1
-2.5
-0.4
carbon source
D-Mannose 10 mM (C)
-0.3
+0.1
-2.2
-2.1
+0.1
carbon source
D-Glucose 10 mM (C)
-0.4
+0.1
-2.6
-1.5
+0.2
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.0
+0.0
-0.3
-3.6
-0.3
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.1
-0.1
-1.0
-3.1
-0.0
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.2
+0.1
-1.3
-3.3
+0.3
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
-0.1
-0.0
-1.5
-2.5
+0.2
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.2
+0.2
-1.7
-1.8
-0.3
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.1
-0.0
-0.9
-2.7
+0.0
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.1
+0.1
-0.2
-3.3
-0.1
carbon source
Levan - from Erwinia herbicola 2.5 mg/mL (C)
-0.1
-0.0
-1.8
-1.7
+0.1
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.2
+0.1
-0.8
-3.1
+0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.1
+0.0
-1.5
-1.8
-0.1
carbon source
Pectin from apple; autoclaved 2.5 mg/mL (C)
-0.1
+0.0
-1.6
-1.5
-0.2
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.5
+0.1
-1.1
-1.6
-0.2
carbon source
D-Glucose 10 mM (C)
-0.2
+0.1
-1.5
-1.6
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
-0.2
+0.0
-1.9
-1.1
+0.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
+0.0
+0.0
-1.5
-1.6
+0.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
+0.2
+0.1
-0.8
-2.5
+0.0
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
+0.1
+0.0
-0.8
-2.5
+0.4
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.2
+0.2
-1.2
-1.2
-0.2
carbon source
D-Xylose 10 mM (C)
-0.2
-0.0
-0.3
-2.3
+0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.0
+0.1
-1.2
-1.6
+0.2
carbon source
D-Xylose 10 mM (C)
+0.1
+0.0
-0.2
-2.5
+0.1
carbon source
Levan - from Erwinia herbicola 2.5 mg/ml (C)
+0.2
+0.0
-0.7
-1.7
+0.4
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.1
-0.2
+2.7
-1.2
+0.2
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