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Homologs
Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS10515 and HMPREF1181_RS10520 are separated by 101 nucleotides
HMPREF1181_RS10520 and HMPREF1181_RS10525 are separated by 134 nucleotides
HMPREF1181_RS10525 and HMPREF1181_RS10530 are separated by 206 nucleotides
HMPREF1181_RS10530 and HMPREF1181_RS10535 are separated by 190 nucleotides
HMPREF1181_RS10515: HMPREF1181_RS10515 - site-specific integrase, at 74,717 to 75,715
_RS10515
HMPREF1181_RS10520: HMPREF1181_RS10520 - TolC family protein, at 75,817 to 77,226
_RS10520
HMPREF1181_RS10525: HMPREF1181_RS10525 - efflux RND transporter periplasmic adaptor subunit, at 77,361 to 78,347
_RS10525
HMPREF1181_RS10530: HMPREF1181_RS10530 - ABC transporter permease, at 78,554 to 81,019
_RS10530
HMPREF1181_RS10535: HMPREF1181_RS10535 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 81,210 to 81,779
_RS10535
Group
Condition
HMPREF1181
_RS10515
HMPREF1181
_RS10520
HMPREF1181
_RS10525
HMPREF1181
_RS10530
HMPREF1181
_RS10535
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.4
-0.4
-0.5
-0.1
-3.6
carbon source
D-Glucose 10 mM (C)
-0.2
-0.4
-0.4
+0.1
-2.6
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.4
-0.3
-0.3
+0.3
-3.2
carbon source
D-Mannose 10 mM (C)
+0.0
-0.4
-0.4
+0.1
-2.3
carbon source
D-Mannose 10 mM (C)
-0.0
-0.2
-0.3
+0.1
-2.2
carbon source
b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
+0.0
-0.1
-0.2
+0.0
-1.9
carbon source
D-Glucose 10 mM (C)
-0.0
-0.4
-0.2
+0.1
-1.5
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.2
-0.5
-0.8
+0.2
-1.1
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.0
-0.5
-0.5
+0.1
-1.1
carbon source
Levan - from Erwinia herbicola 2.5 mg/mL (C)
-0.1
-0.0
-0.1
-0.0
-1.8
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.2
-0.3
-0.2
+0.2
-1.7
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
-0.4
-0.1
-0.1
+0.1
-1.2
carbon source
Pectin from apple; autoclaved 2.5 mg/mL (C)
+0.4
-0.1
-0.1
+0.0
-1.6
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.1
-0.2
-0.2
+0.2
-1.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.1
-0.0
+0.1
+0.0
-1.5
carbon source
Lentilan from mushroom 2.5 mg/mL (C)
-0.0
+0.1
+0.2
+0.0
-1.6
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
+0.1
+0.3
-0.1
-0.0
-1.5
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
+0.1
+0.2
+0.0
+0.0
-1.5
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.6
-0.3
+0.0
-0.0
-1.3
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.2
-0.5
-0.4
-0.5
+0.2
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.5
-0.2
-0.4
+0.1
-1.0
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.1
+0.4
+0.1
-0.1
-1.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.5
-0.1
+0.0
+0.1
-1.2
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.2
+0.2
+0.2
+0.1
-1.3
carbon source complex media
marine_broth_2216 1 x (C) complex media
+0.3
-0.2
+0.3
+0.2
-1.0
carbon source complex media
ABB 1 x (C) complex media
-0.1
+0.6
+0.6
+0.5
-0.2
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.6
+0.2
+0.2
-0.0
+0.7
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
+0.7
+0.3
+0.3
+0.0
+0.4
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.4
+0.7
-0.1
-0.1
+1.9
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.2
-0.3
+0.1
-0.2
+2.7
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