Fitness for 5 genes in Bacteroides stercoris CC31F

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500 ntHMPREF1181_RS10515 and HMPREF1181_RS10520 are separated by 101 nucleotidesHMPREF1181_RS10520 and HMPREF1181_RS10525 are separated by 134 nucleotidesHMPREF1181_RS10525 and HMPREF1181_RS10530 are separated by 206 nucleotidesHMPREF1181_RS10530 and HMPREF1181_RS10535 are separated by 190 nucleotides HMPREF1181_RS10515: HMPREF1181_RS10515 - site-specific integrase, at 74,717 to 75,715 _RS10515 HMPREF1181_RS10520: HMPREF1181_RS10520 - TolC family protein, at 75,817 to 77,226 _RS10520 HMPREF1181_RS10525: HMPREF1181_RS10525 - efflux RND transporter periplasmic adaptor subunit, at 77,361 to 78,347 _RS10525 HMPREF1181_RS10530: HMPREF1181_RS10530 - ABC transporter permease, at 78,554 to 81,019 _RS10530 HMPREF1181_RS10535: HMPREF1181_RS10535 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 81,210 to 81,779 _RS10535
Group Condition HMPREF1181_RS10515 HMPREF1181_RS10520 HMPREF1181_RS10525 HMPREF1181_RS10530 HMPREF1181_RS10535
carbon source Chitin from shrimp shells 2.5 mg/ml (C) +0.4 -0.4 -0.5 -0.1 -3.6
carbon source D-Glucose 10 mM (C) -0.2 -0.4 -0.4 +0.1 -2.6
carbon source Dextrin from potato starch 2.5 mg/ml (C) +0.4 -0.3 -0.3 +0.3 -3.2
carbon source D-Mannose 10 mM (C) +0.0 -0.4 -0.4 +0.1 -2.3
carbon source D-Mannose 10 mM (C) -0.0 -0.2 -0.3 +0.1 -2.2
carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C) +0.0 -0.1 -0.2 +0.0 -1.9
carbon source D-Glucose 10 mM (C) -0.0 -0.4 -0.2 +0.1 -1.5
carbon source a-Cyclodextrin 2.5 mg/mL (C) +0.2 -0.5 -0.8 +0.2 -1.1
carbon source Inulin from chicory 2.5 mg/mL (C) -0.0 -0.5 -0.5 +0.1 -1.1
carbon source Levan - from Erwinia herbicola 2.5 mg/mL (C) -0.1 -0.0 -0.1 -0.0 -1.8
carbon source Dextrin from potato starch 2.5 mg/mL (C) +0.2 -0.3 -0.2 +0.2 -1.7
carbon source Glycogen from bovine liver 2.5 mg/ml (C) -0.4 -0.1 -0.1 +0.1 -1.2
carbon source Pectin from apple; autoclaved 2.5 mg/mL (C) +0.4 -0.1 -0.1 +0.0 -1.6
carbon source Inulin from chicory 2.5 mg/ml (C) +0.1 -0.2 -0.2 +0.2 -1.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/mL (C) +0.1 -0.0 +0.1 +0.0 -1.5
carbon source Lentilan from mushroom 2.5 mg/mL (C) -0.0 +0.1 +0.2 +0.0 -1.6
carbon source Pectic galactan from potato 2.5 mg/mL (C) +0.1 +0.3 -0.1 -0.0 -1.5
carbon source Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) +0.1 +0.2 +0.0 +0.0 -1.5
carbon source Arabinoxylan (Rye Flour) 2.5 mg/mL (C) +0.6 -0.3 +0.0 -0.0 -1.3
carbon source B-glucan from yeast 2.5 mg/ml (C) +0.2 -0.5 -0.4 -0.5 +0.2
carbon source beta-Cyclodextrin 2.5 mg/mL (C) +0.5 -0.2 -0.4 +0.1 -1.0
carbon source Locust bean gum 2.5 mg/mL (C) +0.1 +0.4 +0.1 -0.1 -1.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.5 -0.1 +0.0 +0.1 -1.2
carbon source Pectin from citrus peel; filtered 1 mg/mL (C) +0.2 +0.2 +0.2 +0.1 -1.3
carbon source complex media marine_broth_2216 1 x (C) complex media +0.3 -0.2 +0.3 +0.2 -1.0
carbon source complex media ABB 1 x (C) complex media -0.1 +0.6 +0.6 +0.5 -0.2
carbon source Mucin from porcine stomach type II 2.5 mg/ml (C) +0.6 +0.2 +0.2 -0.0 +0.7
carbon source Mucin from porcine stomach type II 2.5 mg/mL (C) +0.7 +0.3 +0.3 +0.0 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C) -0.4 +0.7 -0.1 -0.1 +1.9
carbon source Glucomannan (konjac) 2.5 mg/ml (C) +0.2 -0.3 +0.1 -0.2 +2.7
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