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Homologs
Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS10500 and HMPREF1181_RS10505 are separated by 182 nucleotides
HMPREF1181_RS10505 and HMPREF1181_RS10510 are separated by 71 nucleotides
HMPREF1181_RS10510 and HMPREF1181_RS10515 are separated by 444 nucleotides
HMPREF1181_RS10515 and HMPREF1181_RS10520 are separated by 101 nucleotides
HMPREF1181_RS10500: HMPREF1181_RS10500 - hypothetical protein, at 73,087 to 73,416
_RS10500
HMPREF1181_RS10505: HMPREF1181_RS10505 - hypothetical protein, at 73,599 to 73,901
_RS10505
HMPREF1181_RS10510: HMPREF1181_RS10510 - hypothetical protein, at 73,973 to 74,272
_RS10510
HMPREF1181_RS10515: HMPREF1181_RS10515 - site-specific integrase, at 74,717 to 75,715
_RS10515
HMPREF1181_RS10520: HMPREF1181_RS10520 - TolC family protein, at 75,817 to 77,226
_RS10520
Group
Condition
HMPREF1181
_RS10500
HMPREF1181
_RS10505
HMPREF1181
_RS10510
HMPREF1181
_RS10515
HMPREF1181
_RS10520
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.9
N.D.
N.D.
+0.2
-0.5
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.8
N.D.
N.D.
+0.2
-0.5
carbon source
D-Glucose 10 mM (C)
-0.6
N.D.
N.D.
-0.0
-0.4
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.9
N.D.
N.D.
+0.1
-0.2
carbon source
D-Glucose 10 mM (C)
-0.3
N.D.
N.D.
-0.2
-0.4
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.7
N.D.
N.D.
+0.1
-0.2
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
-0.3
N.D.
N.D.
-0.4
-0.1
carbon source
B-glucan from yeast 2.5 mg/mL (C)
-0.6
N.D.
N.D.
+0.1
-0.3
carbon source
Lentilan from mushroom 2.5 mg/mL (C)
-0.7
N.D.
N.D.
-0.0
+0.1
carbon source
Pectin from apple; autoclaved 2.5 mg/mL (C)
-0.8
N.D.
N.D.
+0.4
-0.1
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.7
N.D.
N.D.
+0.1
+0.1
carbon source complex media
Columbia 1 x (C) complex media
-0.8
N.D.
N.D.
+0.1
+0.2
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-0.9
N.D.
N.D.
+0.2
+0.2
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.6
N.D.
N.D.
+0.2
+0.2
carbon source complex media
ABB 1 x (C) complex media
-0.4
N.D.
N.D.
-0.1
+0.3
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.5
N.D.
N.D.
+0.7
-0.2
carbon source
Glycogen from bovine liver 2.5 mg/mL (C)
+0.5
N.D.
N.D.
-0.3
-0.1
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.1
N.D.
N.D.
+0.4
-0.4
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.6
N.D.
N.D.
+0.5
+0.2
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
-0.1
N.D.
N.D.
+0.5
-0.2
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
-0.3
N.D.
N.D.
+0.2
+0.3
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.7
N.D.
N.D.
+0.7
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
+0.2
N.D.
N.D.
-0.4
+0.6
carbon source
D-Galacturonic Acid 10 mM (C)
+0.3
N.D.
N.D.
-0.2
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
+0.2
N.D.
N.D.
-0.4
+0.7
carbon source complex media
ABB 1 x (C) complex media
+0.2
N.D.
N.D.
-0.1
+0.6
carbon source
Beta-Lactose 10 mM (C)
+0.7
N.D.
N.D.
-0.1
+0.1
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.4
N.D.
N.D.
+0.6
+0.2
carbon source
Locust bean gum 2.5 mg/mL (C)
+1.0
N.D.
N.D.
+0.1
+0.4
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+1.3
N.D.
N.D.
+0.6
-0.3
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