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Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS09030 and HMPREF1181_RS09035 are separated by 173 nucleotides
HMPREF1181_RS09035 and HMPREF1181_RS09040 are separated by 70 nucleotides
HMPREF1181_RS09040 and HMPREF1181_RS09045 are separated by 26 nucleotides
HMPREF1181_RS09045 and HMPREF1181_RS09050 are separated by 92 nucleotides
HMPREF1181_RS09030: HMPREF1181_RS09030 - NADH-quinone oxidoreductase subunit NuoK, at 406,805 to 407,113
_RS09030
HMPREF1181_RS09035: HMPREF1181_RS09035 - NADH-quinone oxidoreductase subunit L, at 407,287 to 409,200
_RS09035
HMPREF1181_RS09040: HMPREF1181_RS09040 - NADH-quinone oxidoreductase subunit M, at 409,271 to 410,758
_RS09040
HMPREF1181_RS09045: HMPREF1181_RS09045 - NADH-quinone oxidoreductase subunit N, at 410,785 to 412,224
_RS09045
HMPREF1181_RS09050: HMPREF1181_RS09050 - helix-turn-helix domain-containing protein, at 412,317 to 413,186
_RS09050
Group
Condition
HMPREF1181
_RS09030
HMPREF1181
_RS09035
HMPREF1181
_RS09040
HMPREF1181
_RS09045
HMPREF1181
_RS09050
carbon source complex media
MRS 1 x (C) complex media
-0.8
-1.0
-1.1
-1.1
-0.2
carbon source complex media
MRS 1 x (C) complex media
-0.5
-1.0
-1.0
-1.0
-0.2
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-2.5
+0.2
-0.1
+0.1
-0.7
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-2.3
-0.3
+0.4
+0.1
-0.3
carbon source complex media
Columbia 1 x (C) complex media
-0.6
-0.4
-0.1
-0.3
-0.5
carbon source complex media
RCM 1 x (C) complex media
-0.9
-0.3
-0.2
-0.2
-0.0
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
-1.9
+0.2
+0.2
+0.1
-0.2
carbon source complex media
Columbia 1 x (C) complex media
-0.5
-0.2
-0.3
-0.3
-0.3
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-1.9
+0.1
-0.1
+0.4
+0.0
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.5
-0.1
-0.2
-0.2
-0.3
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
-1.1
+0.1
-0.0
-0.1
-0.1
carbon source
Locust bean gum 2.5 mg/mL (C)
-0.2
-0.2
-0.4
-0.2
-0.2
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
-0.8
-0.0
-0.1
-0.1
-0.2
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
-1.2
+0.1
+0.0
+0.1
-0.2
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.9
+0.0
-0.1
-0.2
+0.1
carbon source
polygalacturonic 2.5 mg/ml (C)
-0.7
+0.2
-0.0
+0.1
-0.2
carbon source
D-Galactose 10 mM (C)
-1.0
+0.2
+0.3
+0.1
-0.1
carbon source
D-Galacturonic Acid 10 mM (C)
-1.1
+0.3
+0.2
+0.2
+0.1
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
-0.8
+0.1
+0.1
+0.2
+0.1
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.6
-0.1
-0.0
+0.1
+0.5
carbon source
D-Galacturonic Acid 10 mM (C)
-0.7
+0.1
+0.1
+0.2
+0.1
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.7
+0.0
+0.1
+0.3
+0.2
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.4
+0.2
+0.1
+0.4
+0.3
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+1.9
+0.0
-0.7
-0.5
+0.3
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
-0.1
+0.4
+0.4
+0.5
-0.2
carbon source
Inulin from chicory 2.5 mg/mL (C)
+1.0
-0.2
-0.0
+0.1
+0.2
carbon source
D-Glucose 10 mM (C)
+0.7
+0.0
+0.2
+0.3
+0.1
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+1.3
-0.0
-0.1
+0.1
+0.1
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+1.1
+0.5
-0.1
+0.1
+0.2
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+2.1
-0.1
-0.5
+0.0
+0.5
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