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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS08485 and HMPREF1181_RS08490 are separated by 16 nucleotides
HMPREF1181_RS08490 and HMPREF1181_RS08495 are separated by 261 nucleotides
HMPREF1181_RS08495 and HMPREF1181_RS08500 are separated by 1 nucleotides
HMPREF1181_RS08500 and HMPREF1181_RS08505 are separated by 265 nucleotides
HMPREF1181_RS08485: HMPREF1181_RS08485 - glycoside hydrolase family 88 protein, at 239,623 to 240,891
_RS08485
HMPREF1181_RS08490: HMPREF1181_RS08490 - heparinase II/III family protein, at 240,908 to 242,872
_RS08490
HMPREF1181_RS08495: HMPREF1181_RS08495 - methylmalonyl-CoA mutase, at 243,134 to 245,281
_RS08495
HMPREF1181_RS08500: HMPREF1181_RS08500 - methylmalonyl-CoA mutase small subunit, at 245,283 to 247,181
_RS08500
HMPREF1181_RS08505: HMPREF1181_RS08505 - putative transporter, at 247,447 to 249,108
_RS08505
Group
Condition
HMPREF1181
_RS08485
HMPREF1181
_RS08490
HMPREF1181
_RS08495
HMPREF1181
_RS08500
HMPREF1181
_RS08505
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.2
+0.2
-3.8
-3.6
+0.1
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.0
-0.4
-3.0
-3.3
+0.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
+0.1
-0.0
-2.5
-3.7
-0.3
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-0.4
-0.3
-3.1
-2.2
-0.3
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.1
-0.0
-3.7
-2.4
-0.1
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.3
+0.2
-2.6
-3.3
-0.1
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.2
+0.1
-3.4
-2.7
+0.0
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
+0.1
-0.0
-2.9
-3.1
+0.1
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.1
-0.1
-2.6
-2.8
-0.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
-0.0
-0.1
-2.7
-2.4
-0.3
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
-0.1
-0.1
-2.1
-2.8
-0.1
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.0
-0.0
-2.3
-2.3
-0.4
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
-0.1
+0.1
-3.1
-1.8
+0.1
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.0
-0.1
-2.5
-2.2
+0.1
carbon source complex media
marine_broth_2216 1 x (C) complex media
+0.1
+0.0
-2.6
-2.2
+0.1
carbon source
D-Mannose 10 mM (C)
-0.1
+0.1
-2.6
-2.2
+0.2
carbon source
D-Mannose 10 mM (C)
-0.0
-0.0
-3.0
-1.5
+0.2
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
+0.0
-0.1
-2.3
-1.6
-0.1
carbon source
D-Galacturonic Acid 10 mM (C)
+0.2
+0.1
-2.0
-2.4
-0.0
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
-0.0
-0.0
-2.4
-1.6
-0.1
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
+0.0
-0.1
-1.9
-2.1
-0.0
carbon source
Galactan from Potato 2.5 mg/mL (C)
+0.0
-0.1
-1.7
-2.2
-0.1
carbon source
Levan - from Erwinia herbicola 2.5 mg/mL (C)
-0.0
+0.0
-1.9
-1.8
-0.2
carbon source
Pectin from apple; filtered 1 mg/mL (C)
-0.1
+0.1
-2.1
-1.3
-0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.1
-0.1
-1.3
-1.5
-0.6
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.2
+0.1
-1.6
-1.6
-0.2
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.0
+0.1
-2.0
-1.7
+0.1
carbon source
D-Galacturonic Acid 10 mM (C)
+0.2
+0.0
-2.1
-1.6
+0.1
carbon source complex media
marine_broth_2216 1 x (C) complex media
+0.0
+0.2
-1.4
-2.0
+0.1
carbon source
D-Glucose 10 mM (C)
+0.2
+0.1
-1.7
-1.7
+0.1
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