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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS06760 and HMPREF1181_RS06765 are separated by 23 nucleotides
HMPREF1181_RS06765 and HMPREF1181_RS06770 are separated by 217 nucleotides
HMPREF1181_RS06770 and HMPREF1181_RS06775 are separated by 4 nucleotides
HMPREF1181_RS06775 and HMPREF1181_RS17315 are separated by 455 nucleotides
HMPREF1181_RS06760: HMPREF1181_RS06760 - OmpA family protein, at 724,992 to 726,167
_RS06760
HMPREF1181_RS06765: HMPREF1181_RS06765 - hypothetical protein, at 726,191 to 728,437
_RS06765
HMPREF1181_RS06770: HMPREF1181_RS06770 - hypothetical protein, at 728,655 to 729,272
_RS06770
HMPREF1181_RS06775: HMPREF1181_RS06775 - helix-turn-helix transcriptional regulator, at 729,277 to 730,134
_RS06775
HMPREF1181_RS17315: HMPREF1181_RS17315 - hypothetical protein, at 730,590 to 730,910
_RS17315
Group
Condition
HMPREF1181
_RS06760
HMPREF1181
_RS06765
HMPREF1181
_RS06770
HMPREF1181
_RS06775
HMPREF1181
_RS17315
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-1.1
-1.0
-3.4
+0.9
-1.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
-1.4
-1.0
-2.1
-1.0
+0.1
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-1.2
-1.2
-3.4
+1.1
-0.4
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
-1.1
-0.8
-2.3
-0.6
-0.1
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
-1.1
-0.6
-2.3
+0.1
-0.5
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
-0.9
-0.7
-2.4
+0.5
-0.3
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-1.1
-0.6
-1.7
+0.3
-0.4
carbon source
pectate 2.5 mg/mL (C)
-1.4
-0.6
-1.3
-0.1
+0.0
carbon source complex media
R2A 1 x (C) complex media
-0.9
-0.9
-1.1
-0.1
-0.3
carbon source complex media
LB 1 x (C) complex media
-0.2
-0.3
-2.1
-0.2
-0.4
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-1.5
-0.4
-1.6
+0.7
-0.1
carbon source
Locust bean gum 2.5 mg/ml (C)
-1.2
-0.7
-1.5
+1.2
-0.5
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.4
-0.5
-2.2
+0.3
+0.0
carbon source
Locust bean gum 2.5 mg/mL (C)
-1.2
-0.9
-2.0
+1.2
+0.3
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-1.3
-0.5
-1.7
+0.9
+0.0
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.8
-0.3
-1.9
+0.7
-0.2
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-1.0
-0.3
-1.8
+1.4
-0.6
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
-1.2
-1.2
-1.1
+1.9
-0.2
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.4
+0.1
-0.8
-1.2
+0.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.6
-0.2
-1.1
+3.3
-0.5
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.8
+0.6
+0.8
-1.4
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.4
-0.4
-1.7
+4.1
+0.0
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.8
+0.8
+0.8
-1.3
+0.7
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.8
+0.7
+0.8
-0.8
+0.6
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+1.1
+1.1
+0.8
-1.4
+0.6
carbon source
D-Mannose 10 mM (C)
+0.6
+0.6
+0.9
-0.6
+0.7
carbon source
D-Mannose 10 mM (C)
+0.8
+0.9
+1.1
-1.0
+0.8
carbon source
Inulin from chicory 2.5 mg/ml (C)
+1.1
+1.1
+1.1
-1.1
+0.5
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
+0.9
+1.0
+0.9
-0.5
+0.4
carbon source
D-Glucose 10 mM (C)
+0.9
+1.0
+1.2
-0.8
+0.6
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