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Protein
Homologs
Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS05855 and HMPREF1181_RS05860 are separated by 48 nucleotides
HMPREF1181_RS05860 and HMPREF1181_RS05865 are separated by 118 nucleotides
HMPREF1181_RS05865 and HMPREF1181_RS05870 are separated by 43 nucleotides
HMPREF1181_RS05870 and HMPREF1181_RS05875 are separated by 130 nucleotides
HMPREF1181_RS05855: HMPREF1181_RS05855 - hypothetical protein, at 499,750 to 500,118
_RS05855
HMPREF1181_RS05860: HMPREF1181_RS05860 - sigma-70 family RNA polymerase sigma factor, at 500,167 to 500,721
_RS05860
HMPREF1181_RS05865: HMPREF1181_RS05865 - DNA-3-methyladenine glycosylase I, at 500,840 to 501,424
_RS05865
HMPREF1181_RS05870: HMPREF1181_RS05870 - ribonuclease Z, at 501,468 to 502,382
_RS05870
HMPREF1181_RS05875: HMPREF1181_RS05875 - 30S ribosomal protein S1, at 502,513 to 504,306
_RS05875
Group
Condition
HMPREF1181
_RS05855
HMPREF1181
_RS05860
HMPREF1181
_RS05865
HMPREF1181
_RS05870
HMPREF1181
_RS05875
carbon source
D-Glucose 10 mM (C)
+0.1
+0.5
-0.7
-0.4
-4.0
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-1.0
+1.0
-1.2
+0.2
-3.5
carbon source
D-Galactose 10 mM (C)
-0.4
-0.7
-0.2
-0.3
-2.8
carbon source
D-Galactose 10 mM (C)
-0.3
-0.3
-0.2
-0.1
-3.3
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.1
+1.2
-1.4
-0.3
-3.5
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.4
+1.4
-1.1
+0.0
-4.6
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.2
+0.7
-0.9
-0.3
-3.0
carbon source
D-Glucose 10 mM (C)
+0.3
+1.0
-0.8
-0.4
-3.5
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
+0.2
+0.6
-0.5
-0.1
-3.5
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
-0.1
-0.8
-0.1
+0.0
-2.1
carbon source
D-Mannose 10 mM (C)
+0.4
+1.2
-1.3
-0.3
-3.1
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-1.4
-2.5
-0.1
+0.2
+0.9
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-1.8
+0.2
-0.3
-0.3
-0.8
carbon source complex media
GAM 1 x (C) complex media
-0.2
+0.2
+0.1
-0.2
-2.8
carbon source complex media
GAM 1 x (C) complex media
-0.0
-0.4
-0.2
-0.3
-2.0
carbon source
Polygalacturonic 2.5 mg/ml (C)
-0.1
+0.8
-0.3
-0.2
-2.9
carbon source
D-Mannose 10 mM (C)
+0.3
+1.3
-0.8
-0.4
-3.0
carbon source
Sucrose 10 mM (C)
-0.1
+0.6
-0.1
-0.2
-2.8
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-1.3
-1.3
-0.1
+0.2
+0.0
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.2
+1.3
-0.7
+0.1
-3.4
carbon source
Glycogen from bovine liver 2.5 mg/mL (C)
-0.4
+0.5
-0.1
-0.1
-2.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml (C)
+0.0
+1.0
-0.4
-0.2
-2.2
carbon source
Sucrose 10 mM (C)
+0.1
+0.5
-0.1
-0.1
-2.0
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-1.6
-0.3
-0.6
-0.0
+1.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-1.7
-2.2
+0.2
+0.1
+2.4
carbon source
D-Galacturonic Acid 10 mM (C)
-0.6
-1.0
+0.1
-0.4
+1.1
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
+0.0
-1.0
+0.1
-0.4
+1.8
carbon source
Beta-Lactose 10 mM (C)
+0.8
-0.8
-0.2
-0.2
+1.6
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
-0.1
+0.9
+0.1
-0.1
+1.7
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.4
+1.5
-0.6
+0.4
+1.4
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