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Fitness for 5 genes in
Bacteroides stercoris CC31F
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HMPREF1181_RS05630 and HMPREF1181_RS05635 are separated by 157 nucleotides
HMPREF1181_RS05635 and HMPREF1181_RS05640 are separated by 25 nucleotides
HMPREF1181_RS05640 and HMPREF1181_RS05645 are separated by 14 nucleotides
HMPREF1181_RS05645 and HMPREF1181_RS05650 are separated by 200 nucleotides
HMPREF1181_RS05630: HMPREF1181_RS05630 - excinuclease ABC subunit UvrA, at 434,670 to 437,441
_RS05630
HMPREF1181_RS05635: HMPREF1181_RS05635 - hypothetical protein, at 437,599 to 438,078
_RS05635
HMPREF1181_RS05640: HMPREF1181_RS05640 - hypothetical protein, at 438,104 to 438,328
_RS05640
HMPREF1181_RS05645: HMPREF1181_RS05645 - carbon starvation protein A, at 438,343 to 439,758
_RS05645
HMPREF1181_RS05650: HMPREF1181_RS05650 - family 10 glycosylhydrolase, at 439,959 to 441,413
_RS05650
Group
Condition
HMPREF1181
_RS05630
HMPREF1181
_RS05635
HMPREF1181
_RS05640
HMPREF1181
_RS05645
HMPREF1181
_RS05650
carbon source
Locust bean gum 2.5 mg/mL (C)
-0.1
-0.3
-1.3
-0.5
-0.3
carbon source complex media
Columbia 1 x (C) complex media
-0.4
+0.1
-0.3
-0.4
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
+0.2
+1.0
-0.8
-1.0
-0.4
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.4
-0.4
+0.3
-0.6
+0.0
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.4
+0.3
-0.5
-0.4
+0.2
carbon source
Pectic galactan from potato 2.5 mg/mL (C)
+0.0
+0.3
-0.6
-0.3
-0.1
carbon source
D-Mannose 10 mM (C)
-0.3
-0.4
+0.1
-0.2
+0.1
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-0.1
+0.5
+0.1
-1.1
-0.2
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.4
+0.2
-1.1
-0.6
+0.6
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.2
-0.1
+0.0
-0.9
+0.3
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
+0.2
+0.3
-0.3
-0.7
+0.2
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.1
+0.2
-0.2
-0.6
+0.4
carbon source
D-Glucose 10 mM (C)
-0.1
-0.2
+0.4
-0.3
+0.1
carbon source
D-Mannose 10 mM (C)
-0.1
-0.4
+0.4
-0.2
+0.1
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.1
-0.2
-0.1
-0.4
+0.5
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.0
+0.3
+0.2
-0.6
+0.0
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
+0.2
+0.5
-0.8
-0.7
+0.7
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.3
-0.2
-0.6
+0.0
+0.4
carbon source
Lentilan from mushroom 2.5 mg/ml (C)
+0.3
+0.3
-0.2
-0.3
+0.0
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.1
-0.0
+0.4
-0.5
+0.3
carbon source
Beta-Lactose 10 mM (C)
-0.4
-0.1
+0.5
+0.0
+0.2
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
+0.3
+0.3
-0.8
+0.1
+0.5
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
+0.3
+0.1
+0.5
-0.2
-0.2
carbon source
Amylose from potato 2.5 mg/ml (C)
+0.1
+0.7
+0.1
-0.4
+0.0
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.1
+0.7
+0.2
-0.3
-0.0
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
+0.3
+0.3
-0.5
-0.0
+0.6
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.1
+0.1
+0.8
-0.5
+0.3
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.1
+0.7
+0.5
-0.4
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
+1.1
+0.5
+0.3
-0.5
-0.1
carbon source complex media
R2A 1 x (C) complex media
+0.1
+0.5
+0.3
+0.6
+0.0
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