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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS04300 and HMPREF1181_RS04305 are separated by 33 nucleotides
HMPREF1181_RS04305 and HMPREF1181_RS04310 are separated by 6 nucleotides
HMPREF1181_RS04310 and HMPREF1181_RS04315 are separated by 7 nucleotides
HMPREF1181_RS04315 and HMPREF1181_RS04320 are separated by 16 nucleotides
HMPREF1181_RS04300: HMPREF1181_RS04300 - sulfate adenylyltransferase subunit CysN, at 99,923 to 101,383
_RS04300
HMPREF1181_RS04305: HMPREF1181_RS04305 - sulfate adenylyltransferase subunit CysD, at 101,417 to 102,328
_RS04305
HMPREF1181_RS04310: HMPREF1181_RS04310 - adenylyl-sulfate kinase, at 102,335 to 102,937
_RS04310
HMPREF1181_RS04315: HMPREF1181_RS04315 - SLC13 family permease, at 102,945 to 104,498
_RS04315
HMPREF1181_RS04320: HMPREF1181_RS04320 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 104,515 to 105,330
_RS04320
Group
Condition
HMPREF1181
_RS04300
HMPREF1181
_RS04305
HMPREF1181
_RS04310
HMPREF1181
_RS04315
HMPREF1181
_RS04320
carbon source
Locust bean gum 2.5 mg/mL (C)
-0.6
-0.5
-1.0
+0.0
-0.5
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.1
-0.3
-1.0
-0.5
-0.2
carbon source
Mucin from porcine stomach type II 2.5 mg/ml (C)
-0.1
-0.5
-0.9
-0.2
+0.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
-0.0
-0.0
-0.9
-0.1
-0.3
carbon source
pectate 2.5 mg/ml (C)
-0.1
-0.1
-0.5
-0.3
-0.2
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
+0.1
+0.0
-0.8
-0.2
-0.4
carbon source
pectate 2.5 mg/mL (C)
-0.2
-0.2
-0.7
-0.1
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.0
-0.2
-0.7
-0.2
-0.0
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
-0.1
-0.1
-0.9
+0.1
-0.1
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
+0.2
-0.2
-1.0
+0.2
-0.3
carbon source
Locust bean gum 2.5 mg/ml (C)
-0.4
+0.2
-1.1
+0.1
+0.2
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
-0.4
-0.1
+0.8
-0.8
-0.3
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
-0.2
-0.2
-0.5
+0.1
-0.0
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
+0.2
-0.4
-0.5
-0.0
+0.0
carbon source
D-Galacturonic Acid 10 mM (C)
+0.1
-0.3
-0.3
-0.2
-0.0
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.1
-0.2
-0.6
+0.1
+0.1
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
+0.0
-0.0
-1.0
+0.3
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.2
-0.2
-0.5
+0.0
+0.4
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-0.4
+0.1
+0.4
-0.1
-0.5
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
-0.7
-0.1
-0.2
+0.2
+0.4
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.3
+0.2
+1.4
-0.9
-0.7
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.0
-0.4
+0.1
-0.2
+0.4
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
+0.1
-0.0
-0.7
+0.5
+0.1
carbon source
D-Glucose 10 mM (C)
-0.1
+0.1
+0.6
-0.5
-0.1
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.1
+0.3
+0.5
-0.4
-0.2
carbon source
D-Mannose 10 mM (C)
-0.0
+0.2
+0.6
-0.4
-0.0
carbon source
Inulin from chicory 2.5 mg/mL (C)
-0.1
+0.1
+0.9
-0.3
-0.2
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.2
+0.2
+0.7
-0.2
+0.1
carbon source
D-Mannose 10 mM (C)
-0.2
+0.3
+0.9
-0.3
-0.1
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
-0.2
+0.1
+1.3
-0.5
-0.1
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