Fitness for 5 genes in Bacteroides stercoris CC31F

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500 ntHMPREF1181_RS17735 and HMPREF1181_RS17190 overlap by 42 nucleotidesHMPREF1181_RS17190 and HMPREF1181_RS02225 are separated by 43 nucleotidesHMPREF1181_RS02225 and HMPREF1181_RS02230 are separated by 19 nucleotidesHMPREF1181_RS02230 and HMPREF1181_RS02235 are separated by 2 nucleotides HMPREF1181_RS17735: HMPREF1181_RS17735 - IS982 family transposase, at 544,474 to 544,944 _RS17735 HMPREF1181_RS17190: HMPREF1181_RS17190 - epoxyqueuosine reductase QueH, at 544,903 to 545,334 _RS17190 HMPREF1181_RS02225: HMPREF1181_RS02225 - serine hydrolase, at 545,378 to 546,871 _RS02225 HMPREF1181_RS02230: HMPREF1181_RS02230 - hypothetical protein, at 546,891 to 548,264 _RS02230 HMPREF1181_RS02235: HMPREF1181_RS02235 - endonuclease/exonuclease/phosphatase family protein, at 548,267 to 549,127 _RS02235
Group Condition HMPREF1181_RS17735 HMPREF1181_RS17190 HMPREF1181_RS02225 HMPREF1181_RS02230 HMPREF1181_RS02235
carbon source Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C) +0.1 -0.5 -0.2 -0.4 -0.1
carbon source B-glucan from yeast 2.5 mg/ml (C) -0.2 -0.9 +0.3 -0.2 -0.0
carbon source Dextrin from potato starch 2.5 mg/ml (C) -0.4 +0.2 -0.2 +0.0 -0.1
carbon source D-Galacturonic Acid 10 mM (C) +0.2 -0.4 -0.1 -0.1 -0.1
carbon source beta-Cyclodextrin 2.5 mg/mL (C) -0.7 +0.1 +0.1 +0.1 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) +0.3 -0.7 +0.1 -0.2 +0.1
carbon source Arabinoxylan (Rye Flour) 2.5 mg/mL (C) -0.2 +0.3 +0.0 -0.3 -0.0
carbon source Pectic galactan from potato 2.5 mg/ml (C) +0.2 -0.4 +0.1 -0.0 -0.1
carbon source complex media Yeast Extract 2.5 mg/mL (C) complex media +0.3 -0.5 -0.1 -0.1 +0.1
carbon source Dextrin from potato starch 2.5 mg/mL (C) -0.0 +0.4 -0.4 +0.1 -0.3
carbon source a-Cyclodextrin 2.5 mg/mL (C) -0.4 +0.5 -0.1 -0.1 -0.1
carbon source Inulin from chicory 2.5 mg/mL (C) -0.1 +0.3 -0.3 +0.2 -0.2
carbon source complex media Peptone 2.5 mg/mL (C) complex media -0.3 +0.2 +0.1 -0.1 +0.1
carbon source Inulin from chicory 2.5 mg/ml (C) -0.2 +0.2 -0.2 +0.1 +0.1
carbon source complex media marine_broth_2216 1 x (C) complex media +0.1 +0.2 -0.1 -0.0 -0.2
carbon source D-Mannose 10 mM (C) -0.1 +0.6 -0.3 +0.1 -0.2
carbon source Pectin from citrus peel; filtered 1 mg/mL (C) +0.2 +0.2 -0.2 +0.0 -0.1
carbon source D-Mannose 10 mM (C) -0.0 +0.2 -0.1 +0.3 -0.1
carbon source Amylose from potato 2.5 mg/mL (C) +0.3 -0.3 -0.1 +0.1 +0.3
carbon source complex media R2A 1 x (C) complex media +0.3 -0.1 -0.1 +0.2 +0.0
carbon source Mucin from porcine stomach type III 2.5 mg/ml (C) +0.3 -0.3 +0.2 +0.1 +0.2
carbon source polygalacturonic 2.5 mg/ml (C) +0.2 +0.1 +0.1 -0.0 +0.1
carbon source Mucin from porcine stomach type III 2.5 mg/mL (C) +0.5 -0.2 +0.2 +0.0 +0.1
carbon source Mucin from porcine stomach type II 2.5 mg/ml (C) +0.1 -0.1 +0.2 +0.1 +0.3
carbon source complex media RCM 1 x (C) complex media +0.3 +0.3 +0.1 +0.1 +0.0
carbon source Chitin from shrimp shells 2.5 mg/ml (C) +0.1 +0.2 -0.1 +0.6 -0.1
carbon source Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) +0.3 +0.3 +0.1 +0.2 +0.0
carbon source Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C) +0.4 +0.2 +0.1 +0.1 +0.1
carbon source complex media Yeast Extract 2.5 mg/mL (C) complex media +0.4 +0.2 +0.0 +0.0 +0.2
carbon source Glucomannan (konjac) 2.5 mg/ml (C) +0.2 +0.8 +0.1 -0.0 +0.2
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