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Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS01750 and HMPREF1181_RS01755 are separated by 198 nucleotides
HMPREF1181_RS01755 and HMPREF1181_RS01760 are separated by 67 nucleotides
HMPREF1181_RS01760 and HMPREF1181_RS01765 are separated by 217 nucleotides
HMPREF1181_RS01765 and HMPREF1181_RS01770 are separated by 619 nucleotides
HMPREF1181_RS01750: HMPREF1181_RS01750 - TonB-dependent receptor, at 419,615 to 422,335
_RS01750
HMPREF1181_RS01755: HMPREF1181_RS01755 - fimbrillin family protein, at 422,534 to 424,480
_RS01755
HMPREF1181_RS01760: HMPREF1181_RS01760 - DNA/RNA non-specific endonuclease, at 424,548 to 426,185
_RS01760
HMPREF1181_RS01765: HMPREF1181_RS01765 - IS4 family transposase, at 426,403 to 427,566
_RS01765
HMPREF1181_RS01770: HMPREF1181_RS01770 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 428,186 to 429,553
_RS01770
Group
Condition
HMPREF1181
_RS01750
HMPREF1181
_RS01755
HMPREF1181
_RS01760
HMPREF1181
_RS01765
HMPREF1181
_RS01770
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
-0.1
-0.3
-0.5
N.D.
-0.3
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-0.0
-0.3
-0.3
N.D.
-0.4
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
-0.2
-0.2
-0.4
N.D.
-0.3
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.2
+0.1
+0.3
N.D.
-1.7
carbon source
D-Galacturonic Acid 10 mM (C)
-0.0
-0.1
-0.1
N.D.
-0.8
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.1
-0.2
-0.3
N.D.
-0.4
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.0
+0.0
-0.6
N.D.
-0.4
carbon source
D-Galactose 10 mM (C)
+0.0
+0.0
+0.1
N.D.
-1.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
+0.1
-0.1
-0.3
N.D.
-0.4
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
+0.1
+0.1
-0.7
N.D.
-0.2
carbon source
Locust bean gum 2.5 mg/mL (C)
+0.2
+0.1
-0.5
N.D.
-0.5
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.4
-0.4
+0.1
N.D.
-0.5
carbon source
D-Glucose 10 mM (C)
+0.1
+0.4
+0.4
N.D.
-0.9
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.1
+0.2
+0.3
N.D.
-0.6
carbon source
Sucrose 10 mM (C)
+0.0
+0.2
+0.2
N.D.
-0.5
carbon source
Amylose from potato 2.5 mg/ml (C)
-0.2
+0.1
+0.6
N.D.
-0.4
carbon source
D-Glucose 10 mM (C)
+0.1
+0.4
+0.6
N.D.
-1.0
carbon source
D-Maltose 10 mM (C)
-0.0
+0.2
+0.4
N.D.
-0.5
carbon source
Sucrose 10 mM (C)
+0.1
+0.2
+0.3
N.D.
-0.5
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.1
+0.3
+0.4
N.D.
-0.7
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.1
+0.3
-0.4
N.D.
+0.2
carbon source
D-Mannose 10 mM (C)
+0.1
+0.4
+0.5
N.D.
-0.8
carbon source
Amylose from potato 2.5 mg/mL (C)
-0.1
+0.0
+0.8
N.D.
-0.4
carbon source
D-Mannose 10 mM (C)
+0.1
+0.6
+0.7
N.D.
-1.0
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.1
+0.2
+0.4
N.D.
-0.3
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.1
+0.2
+0.6
N.D.
-0.3
carbon source
Beta-Lactose 10 mM (C)
+0.1
+0.3
+0.5
N.D.
-0.0
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.2
+0.2
+0.3
N.D.
+0.8
carbon source complex media
marine_broth_2216 1 x (C) complex media
+0.0
+0.6
+1.1
N.D.
-0.1
carbon source complex media
marine_broth_2216 1 x (C) complex media
-0.0
+0.5
+1.0
N.D.
+0.3
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