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Protein
Homologs
Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS01500 and HMPREF1181_RS01505 overlap by 4 nucleotides
HMPREF1181_RS01505 and HMPREF1181_RS01510 are separated by 406 nucleotides
HMPREF1181_RS01510 and HMPREF1181_RS01515 overlap by 8 nucleotides
HMPREF1181_RS01515 and HMPREF1181_RS01520 are separated by 37 nucleotides
HMPREF1181_RS01500: HMPREF1181_RS01500 - DUF5119 domain-containing protein, at 364,200 to 365,165
_RS01500
HMPREF1181_RS01505: HMPREF1181_RS01505 - DUF3575 domain-containing protein, at 365,162 to 366,127
_RS01505
HMPREF1181_RS01510: HMPREF1181_RS01510 - DNA-protecting protein DprA, at 366,534 to 367,652
_RS01510
HMPREF1181_RS01515: HMPREF1181_RS01515 - acyl-CoA thioesterase, at 367,645 to 368,052
_RS01515
HMPREF1181_RS01520: HMPREF1181_RS01520 - U32 family peptidase, at 368,090 to 369,382
_RS01520
Group
Condition
HMPREF1181
_RS01500
HMPREF1181
_RS01505
HMPREF1181
_RS01510
HMPREF1181
_RS01515
HMPREF1181
_RS01520
carbon source
Locust bean gum 2.5 mg/mL (C)
-0.5
+0.3
-0.1
-1.2
-0.8
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
-0.5
-0.2
+0.1
-0.6
-0.6
carbon source
Glycogen from bovine liver 2.5 mg/mL (C)
-0.4
-0.2
-0.0
-0.5
-0.6
carbon source
pectate 2.5 mg/mL (C)
-0.6
-0.4
+0.0
-0.2
-0.5
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
-0.0
+0.2
+0.3
-0.4
-1.6
carbon source
Locust bean gum 2.5 mg/ml (C)
-0.8
+0.2
+0.1
-0.7
-0.4
carbon source
D-Galactose 10 mM (C)
-0.3
-0.0
-0.2
+0.1
-1.1
carbon source
D-Galactose 10 mM (C)
-0.5
-0.2
+0.0
+0.1
-0.8
carbon source
Pectin from apple; autoclaved 2.5 mg/mL (C)
-0.2
-0.0
-0.1
-0.4
-0.6
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-0.4
+0.2
-0.2
-0.8
-0.1
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
-0.4
-0.0
-0.0
-0.2
-0.6
carbon source
Mucin from porcine stomach type II 2.5 mg/mL (C)
-0.1
-0.1
+0.0
-1.1
+0.1
carbon source
Inulin from chicory 2.5 mg/ml (C)
-0.2
-0.1
+0.1
-0.1
-0.8
carbon source complex media
Yeast Extract 2.5 mg/mL (C) complex media
-0.5
-0.4
+0.1
-0.1
-0.1
carbon source
D-Glucose 10 mM (C)
+0.0
-0.0
+0.3
-0.1
-1.2
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
-0.0
+0.0
+0.2
-0.4
-0.9
carbon source
D-Mannose 10 mM (C)
+0.1
+0.1
+0.1
-0.3
-1.0
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.1
+0.1
+0.2
-0.4
-1.0
carbon source
D-Galacturonic Acid 10 mM (C)
-0.0
-0.1
-0.2
+0.2
-0.8
carbon source
D-Glucose 10 mM (C)
+0.1
-0.0
+0.2
+0.0
-1.2
carbon source
Mucin from porcine stomach type III 2.5 mg/ml (C)
-0.5
-0.3
-0.2
-0.2
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
-0.3
-0.4
+0.3
-0.7
+0.2
carbon source
Pectin from citrus peel; filtered 1 mg/mL (C)
-0.5
-0.1
+0.1
+0.3
-0.4
carbon source
D-Galacturonic Acid 10 mM (C)
-0.2
-0.2
+0.1
+0.3
-0.6
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-0.4
-0.3
-0.0
+0.4
-0.2
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.1
+0.0
+0.2
-0.1
-0.8
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.1
+0.3
+0.4
-0.1
-0.7
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.3
+0.6
+0.4
+0.3
-1.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
-0.2
-0.2
+0.0
+0.7
+0.4
carbon source
Chitin from shrimp shells 2.5 mg/ml (C)
+0.5
-0.2
+0.2
+0.4
+0.1
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