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Cofit
Fitness for 5 genes in
Bacteroides stercoris CC31F
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500 nt
HMPREF1181_RS00780 and HMPREF1181_RS17160 are separated by 2198 nucleotides
HMPREF1181_RS17160 and HMPREF1181_RS00785 are separated by 148 nucleotides
HMPREF1181_RS00785 and HMPREF1181_RS00790 are separated by 155 nucleotides
HMPREF1181_RS00790 and HMPREF1181_RS00795 are separated by 1568 nucleotides
HMPREF1181_RS00780: HMPREF1181_RS00780 - hypothetical protein, at 173,142 to 174,050
_RS00780
HMPREF1181_RS17160: HMPREF1181_RS17160 - transposase, at 176,249 to 176,380
_RS17160
HMPREF1181_RS00785: HMPREF1181_RS00785 - tRNA-Leu, at 176,529 to 176,612
_RS00785
HMPREF1181_RS00790: HMPREF1181_RS00790 - mannose-1-phosphate guanylyltransferase, at 176,768 to 177,853
_RS00790
HMPREF1181_RS00795: HMPREF1181_RS00795 - IS1182 family transposase, at 179,422 to 181,077
_RS00795
Group
Condition
HMPREF1181
_RS00780
HMPREF1181
_RS17160
HMPREF1181
_RS00785
HMPREF1181
_RS00790
HMPREF1181
_RS00795
carbon source
D-Glucose 10 mM (C)
+0.3
N.D.
N.D.
-3.8
N.D.
carbon source
Dextrin from potato starch 2.5 mg/ml (C)
+0.3
N.D.
N.D.
-3.6
N.D.
carbon source
Inulin from chicory 2.5 mg/mL (C)
+0.3
N.D.
N.D.
-3.6
N.D.
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.4
N.D.
N.D.
-3.4
N.D.
carbon source
D-Mannose 10 mM (C)
+0.4
N.D.
N.D.
-3.2
N.D.
carbon source
Dextrin from potato starch 2.5 mg/mL (C)
+0.4
N.D.
N.D.
-3.0
N.D.
carbon source
D-Mannose 10 mM (C)
+0.3
N.D.
N.D.
-2.8
N.D.
carbon source
Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
+0.1
N.D.
N.D.
-2.4
N.D.
carbon source
Glycogen from bovine liver 2.5 mg/ml (C)
+0.1
N.D.
N.D.
-2.4
N.D.
carbon source
Pectin from apple; filtered 1 mg/mL (C)
+0.1
N.D.
N.D.
-2.4
N.D.
carbon source
D-Glucose 10 mM (C)
+0.3
N.D.
N.D.
-2.5
N.D.
carbon source
Inulin from chicory 2.5 mg/ml (C)
+0.2
N.D.
N.D.
-2.3
N.D.
carbon source
D-Maltose 10 mM (C)
+0.0
N.D.
N.D.
-2.1
N.D.
carbon source
Pectic galactan from potato 2.5 mg/ml (C)
-0.3
N.D.
N.D.
-1.6
N.D.
carbon source
Beta-Lactose 10 mM (C)
+0.1
N.D.
N.D.
-1.9
N.D.
carbon source
D-Maltose 10 mM (C)
+0.0
N.D.
N.D.
-1.7
N.D.
carbon source
b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
+0.2
N.D.
N.D.
-1.8
N.D.
carbon source complex media
GAM 1 x (C) complex media
+0.2
N.D.
N.D.
-1.9
N.D.
carbon source
Locust bean gum 2.5 mg/ml (C)
+0.2
N.D.
N.D.
-1.9
N.D.
carbon source complex media
GAM 1 x (C) complex media
+0.1
N.D.
N.D.
-1.7
N.D.
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
+0.0
N.D.
N.D.
-1.6
N.D.
carbon source
D-Galactose 10 mM (C)
-0.0
N.D.
N.D.
-1.5
N.D.
carbon source
Beta-Lactose 10 mM (C)
+0.1
N.D.
N.D.
-1.6
N.D.
carbon source
Glycogen from bovine liver 2.5 mg/mL (C)
+0.2
N.D.
N.D.
-1.6
N.D.
carbon source
D-Galactose 10 mM (C)
+0.1
N.D.
N.D.
-1.6
N.D.
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
+0.2
N.D.
N.D.
-1.7
N.D.
carbon source
Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
+0.1
N.D.
N.D.
-1.5
N.D.
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.2
N.D.
N.D.
-1.5
N.D.
carbon source
Polygalacturonic 2.5 mg/ml (C)
+0.2
N.D.
N.D.
-1.3
N.D.
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.5
N.D.
N.D.
-1.2
N.D.
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