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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS21670 and HGI48_RS21675 are separated by 44 nucleotides
HGI48_RS21675 and HGI48_RS21680 are separated by 3 nucleotides
HGI48_RS21680 and HGI48_RS21685 overlap by 1 nucleotides
HGI48_RS21685 and HGI48_RS21690 overlap by 4 nucleotides
HGI48_RS21670: HGI48_RS21670 - MBL fold metallo-hydrolase, at 4,835,332 to 4,836,105
_RS21670
HGI48_RS21675: HGI48_RS21675 - helix-turn-helix domain-containing protein, at 4,836,150 to 4,837,127
_RS21675
HGI48_RS21680: HGI48_RS21680 - hypothetical protein, at 4,837,131 to 4,838,198
_RS21680
HGI48_RS21685: HGI48_RS21685 - restriction system-associated AAA family ATPase, at 4,838,198 to 4,839,976
_RS21685
HGI48_RS21690: HGI48_RS21690 - restriction endonuclease subunit S, at 4,839,973 to 4,841,481
_RS21690
Group
Condition
HGI48
_RS21670
HGI48
_RS21675
HGI48
_RS21680
HGI48
_RS21685
HGI48
_RS21690
carbon source
M9+polygalacturonate
-0.6
-0.2
+0.0
-0.1
+0.0
carbon source
M9+sucrose
-0.2
-0.2
+0.2
+0.0
-0.2
carbon source
M9+sucrose
-0.2
-0.2
-0.1
-0.0
+0.2
carbon source
M9+sucrose
+0.0
-0.4
+0.1
-0.1
+0.1
control
LB
+0.2
+0.0
-0.1
+0.0
-0.4
plant
Upstate
+0.1
-0.2
+0.1
+0.0
-0.2
control
PDB
-0.2
+0.1
+0.2
+0.1
-0.2
plant
Atlantic
+0.5
-0.1
-0.2
-0.0
-0.1
carbon source
M9+polygalacturonate
-0.3
+0.2
+0.0
-0.1
+0.4
plant
Norland
+0.3
-0.1
+0.2
+0.1
-0.1
control
PDB
+0.4
+0.2
+0.1
-0.1
-0.4
carbon source
M9+glycerol
+0.3
+0.1
-0.0
-0.1
+0.0
carbon source
M9+polygalacturonate
+0.4
+0.3
+0.0
-0.1
-0.2
plant
Upstate
+0.3
-0.2
-0.1
+0.1
+0.3
plant
Upstate
+0.3
+0.1
-0.0
+0.2
-0.1
plant
Norland
+0.5
+0.1
+0.0
-0.1
+0.0
plant
Atlantic
-0.1
+0.2
+0.1
+0.2
+0.1
plant
Norland
+0.0
+0.1
+0.2
-0.0
+0.2
plant
Atlantic
+0.1
+0.4
-0.0
+0.2
-0.0
control
PDB
+0.3
+0.1
+0.0
+0.1
+0.1
control
PDB
+0.3
+0.3
+0.1
+0.1
+0.1
carbon source
M9+glycerol
+0.5
+0.1
+0.1
-0.0
+0.2
carbon source
M9+glycerol
+0.7
+0.2
-0.1
+0.1
-0.0
plant
Upstate
+1.0
-0.2
+0.4
-0.1
-0.1
plant
Norland
+0.7
-0.0
+0.1
+0.1
+0.1
plant
Upstate
+0.8
+0.1
+0.2
-0.1
+0.1
plant
Atlantic
+0.7
-0.0
+0.1
+0.2
+0.2
plant
Atlantic
+0.7
+0.0
+0.3
+0.1
+0.2
control
PDB
+0.6
-0.0
+0.2
+0.2
+0.4
carbon source
M9+glycerol
+0.7
+0.2
+0.2
+0.1
+0.3
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