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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS21640 and HGI48_RS21645 overlap by 1 nucleotides
HGI48_RS21645 and HGI48_RS21650 overlap by 4 nucleotides
HGI48_RS21650 and HGI48_RS21655 overlap by 4 nucleotides
HGI48_RS21655 and HGI48_RS21660 are separated by 98 nucleotides
HGI48_RS21640: HGI48_RS21640 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 4,830,046 to 4,830,945
_RS21640
HGI48_RS21645: HGI48_RS21645 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 4,830,945 to 4,832,603
_RS21645
HGI48_RS21650: HGI48_RS21650 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 4,832,600 to 4,832,941
_RS21650
HGI48_RS21655: HGI48_RS21655 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 4,832,938 to 4,833,336
_RS21655
HGI48_RS21660: HGI48_RS21660 - GNAT family N-acetyltransferase, at 4,833,435 to 4,833,923
_RS21660
Group
Condition
HGI48
_RS21640
HGI48
_RS21645
HGI48
_RS21650
HGI48
_RS21655
HGI48
_RS21660
carbon source
M9+sucrose
-0.4
-1.1
-0.9
-2.5
+0.0
carbon source
M9+sucrose
-1.2
-1.1
-0.4
-1.3
-0.2
carbon source
M9+polygalacturonate
+0.1
-1.0
-0.5
-1.9
-0.1
control
PDB
-0.9
+0.2
+0.2
-2.7
-0.2
carbon source
M9+glycerol
-0.5
-1.0
-0.1
-1.4
-0.3
carbon source
M9+glycerol
-0.3
-0.7
-0.8
-1.1
-0.2
control
PDB
-0.4
-0.0
+0.1
-2.3
-0.0
carbon source
M9+glycerol
-0.6
-0.3
+0.5
-1.9
-0.2
control
PDB
-1.0
-0.2
-0.3
-0.8
+0.2
control
PDB
-1.1
+0.1
+0.2
-1.3
+0.1
control
PDB
-0.8
-0.0
-0.2
-0.8
-0.0
carbon source
M9+polygalacturonate
+0.5
-0.9
-1.2
-0.2
-0.0
carbon source
M9+sucrose
+0.1
-0.5
-0.8
-0.3
-0.1
plant
Upstate
-0.0
-0.0
+0.1
-1.2
-0.3
carbon source
M9+glycerol
-0.5
-0.4
+0.1
-0.8
+0.2
carbon source
M9+glycerol
-0.6
-0.9
+0.8
-0.8
+0.1
control
PDB
-0.8
-0.2
+0.6
-0.7
-0.0
plant
Atlantic
+0.5
-0.0
-0.1
-1.6
+0.1
control
LB
+0.2
+0.2
+0.3
-1.5
-0.1
plant
Upstate
+0.8
+0.3
+0.1
-1.8
+0.0
plant
Upstate
-0.3
+0.2
+1.0
-1.0
-0.1
carbon source
M9+glycerol
-0.6
-0.2
+0.7
+0.2
+0.1
plant
Atlantic
+0.6
+0.1
-0.7
+0.4
-0.1
plant
Atlantic
+0.8
-0.1
+0.9
-1.0
-0.2
control
LB
+0.5
+0.3
+0.6
-0.4
+0.2
plant
Atlantic
+0.1
+0.9
+1.2
-0.5
-0.3
plant
Norland
+0.5
+0.3
+0.1
+0.9
-0.2
plant
Norland
-0.1
-0.0
+1.4
+0.9
-0.1
plant
Norland
+0.1
+0.0
+0.9
+1.1
+0.2
plant
Atlantic
+0.4
+0.2
+3.1
+0.7
-0.0
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