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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS21535 and HGI48_RS21540 are separated by 54 nucleotides
HGI48_RS21540 and HGI48_RS21545 are separated by 437 nucleotides
HGI48_RS21545 and HGI48_RS21550 overlap by 11 nucleotides
HGI48_RS21550 and HGI48_RS21555 overlap by 4 nucleotides
HGI48_RS21535: HGI48_RS21535 - beta-ketoacyl-ACP synthase, at 4,803,795 to 4,805,024
_RS21535
HGI48_RS21540: HGI48_RS21540 - diguanylate cyclase, at 4,805,079 to 4,807,394
_RS21540
HGI48_RS21545: HGI48_RS21545 - hypothetical protein, at 4,807,832 to 4,809,271
_RS21545
HGI48_RS21550: HGI48_RS21550 - P-loop NTPase, at 4,809,261 to 4,810,574
_RS21550
HGI48_RS21555: HGI48_RS21555 - SAM-dependent methyltransferase, at 4,810,571 to 4,810,987
_RS21555
Group
Condition
HGI48
_RS21535
HGI48
_RS21540
HGI48
_RS21545
HGI48
_RS21550
HGI48
_RS21555
plant
Atlantic
-0.2
-0.1
-0.0
-0.2
-0.2
carbon source
M9+sucrose
-0.0
-0.1
-0.1
-0.1
-0.3
carbon source
M9+polygalacturonate
+0.2
-0.2
-0.0
+0.0
-0.5
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.2
-0.1
+0.0
control
PDB
-0.1
-0.1
-0.1
+0.0
-0.2
carbon source
M9+sucrose
-0.1
-0.2
+0.1
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.1
-0.2
-0.2
+0.0
-0.1
carbon source
M9+sucrose
-0.0
-0.0
-0.1
-0.1
-0.2
plant
Norland
+0.0
+0.1
-0.1
-0.2
-0.2
plant
Atlantic
-0.3
-0.0
+0.1
+0.1
-0.2
control
LB
+0.0
-0.1
-0.1
-0.2
+0.1
plant
Norland
+0.0
-0.0
-0.2
+0.2
-0.2
carbon source
M9+glycerol
-0.1
-0.0
-0.0
-0.1
+0.2
carbon source
M9+glycerol
+0.1
-0.1
+0.0
+0.1
-0.2
carbon source
M9+glycerol
-0.2
-0.0
+0.0
-0.1
+0.2
control
PDB
-0.2
-0.0
+0.0
+0.0
+0.2
plant
Norland
-0.1
+0.2
+0.0
+0.1
-0.1
control
PDB
-0.1
-0.1
-0.1
+0.0
+0.2
control
PDB
+0.1
+0.1
-0.1
-0.1
+0.1
plant
Atlantic
-0.0
-0.1
-0.1
+0.1
+0.3
control
PDB
-0.0
+0.2
-0.1
-0.1
+0.1
control
LB
-0.1
+0.2
-0.0
-0.1
+0.1
carbon source
M9+glycerol
+0.0
+0.1
-0.2
+0.2
+0.0
plant
Atlantic
+0.1
+0.3
-0.0
+0.0
-0.1
control
PDB
-0.0
+0.1
-0.0
-0.1
+0.3
plant
Upstate
-0.1
+0.1
+0.1
+0.1
+0.1
plant
Upstate
+0.2
+0.3
-0.0
-0.1
+0.2
plant
Atlantic
+0.3
+0.2
+0.0
-0.1
+0.2
plant
Atlantic
+0.3
+0.1
+0.1
+0.1
+0.2
plant
Upstate
+0.1
+0.3
+0.1
+0.2
+0.2
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HGI48_RS21545
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