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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS20855 and HGI48_RS20860 overlap by 4 nucleotides
HGI48_RS20860 and HGI48_RS20865 are separated by 109 nucleotides
HGI48_RS20865 and HGI48_RS20870 overlap by 10 nucleotides
HGI48_RS20870 and HGI48_RS20875 are separated by 530 nucleotides
HGI48_RS20855: HGI48_RS20855 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 4,658,637 to 4,661,141
_RS20855
HGI48_RS20860: HGI48_RS20860 - UDP-forming cellulose synthase catalytic subunit, at 4,661,138 to 4,663,228
_RS20860
HGI48_RS20865: HGI48_RS20865 - cellulose synthase operon protein YhjQ, at 4,663,338 to 4,664,153
_RS20865
HGI48_RS20870: HGI48_RS20870 - cellulose biosynthesis protein BcsO, at 4,664,144 to 4,664,764
_RS20870
HGI48_RS20875: HGI48_RS20875 - EamA family transporter, at 4,665,295 to 4,665,447
_RS20875
Group
Condition
HGI48
_RS20855
HGI48
_RS20860
HGI48
_RS20865
HGI48
_RS20870
HGI48
_RS20875
carbon source
M9+sucrose
-0.1
-0.1
-0.2
+0.2
-0.7
plant
Norland
-0.6
-0.3
-0.1
+0.2
-0.2
carbon source
M9+sucrose
-0.2
-0.1
-0.1
+0.2
-0.3
carbon source
M9+glycerol
-0.3
-0.3
+0.1
+0.2
-0.2
plant
Atlantic
-0.0
+0.1
-0.5
-0.1
+0.3
plant
Norland
-0.0
-0.1
+0.2
-0.7
+0.3
carbon source
M9+polygalacturonate
+0.3
-0.1
-0.3
-0.2
+0.0
carbon source
M9+glycerol
-0.4
-0.1
+0.3
+0.2
-0.2
carbon source
M9+glycerol
-0.1
-0.3
+0.3
-0.1
+0.2
carbon source
M9+polygalacturonate
-0.2
-0.0
-0.2
-0.3
+0.8
control
PDB
+0.2
-0.1
+0.5
-0.6
-0.0
plant
Atlantic
-0.2
-0.1
+0.2
-0.3
+0.5
plant
Upstate
-0.2
-0.1
-0.1
+0.1
+0.3
carbon source
M9+polygalacturonate
-0.2
-0.2
+0.3
+0.0
+0.1
carbon source
M9+glycerol
-0.3
-0.3
+0.2
+0.3
+0.2
control
PDB
-0.3
-0.2
+0.2
+0.1
+0.4
plant
Norland
-0.4
+0.0
-0.2
+0.4
+0.4
carbon source
M9+glycerol
-0.1
-0.3
+0.6
+0.5
-0.3
plant
Upstate
-0.0
-0.3
+0.1
+0.1
+0.5
plant
Atlantic
-0.2
-0.1
+0.6
-0.5
+0.5
control
LB
-0.1
-0.1
-0.0
+0.1
+0.5
control
PDB
-0.1
-0.2
+0.2
+0.1
+0.4
control
LB
-0.0
-0.2
+0.2
+0.4
+0.1
carbon source
M9+glycerol
-0.1
-0.1
+0.2
+0.3
+0.3
control
LB
-0.1
-0.1
+0.2
+0.2
+0.4
control
PDB
-0.1
-0.0
-0.0
+0.4
+0.4
plant
Atlantic
-0.1
-0.1
-0.2
+0.1
+1.0
plant
Upstate
-0.2
-0.1
-0.1
+0.5
+0.7
plant
Atlantic
+0.0
-0.0
+0.2
+0.6
+0.4
plant
Norland
+0.0
-0.1
+0.0
+0.4
+0.7
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