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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS20510 and HGI48_RS20515 are separated by 155 nucleotides
HGI48_RS20515 and HGI48_RS20520 are separated by 94 nucleotides
HGI48_RS20520 and HGI48_RS20525 are separated by 3 nucleotides
HGI48_RS20525 and HGI48_RS20530 are separated by 121 nucleotides
HGI48_RS20510: HGI48_RS20510 - triose-phosphate isomerase, at 4,584,100 to 4,584,870
_RS20510
HGI48_RS20515: HGI48_RS20515 - alkaline phosphatase, at 4,585,026 to 4,586,465
_RS20515
HGI48_RS20520: HGI48_RS20520 - agmatine deiminase, at 4,586,560 to 4,587,657
_RS20520
HGI48_RS20525: HGI48_RS20525 - N-carbamoylputrescine amidase, at 4,587,661 to 4,588,545
_RS20525
HGI48_RS20530: HGI48_RS20530 - 6-phosphofructokinase, at 4,588,667 to 4,589,629
_RS20530
Group
Condition
HGI48
_RS20510
HGI48
_RS20515
HGI48
_RS20520
HGI48
_RS20525
HGI48
_RS20530
control
PDB
N.D.
-0.2
-0.7
-0.5
N.D.
control
PDB
N.D.
+0.1
-0.7
-0.7
N.D.
carbon source
M9+glycerol
N.D.
-0.5
-0.4
-0.3
N.D.
control
PDB
N.D.
-0.3
-0.5
-0.3
N.D.
control
PDB
N.D.
+0.1
-0.6
-0.7
N.D.
control
PDB
N.D.
-0.1
-0.5
-0.5
N.D.
plant
Atlantic
N.D.
-0.4
-0.3
-0.2
N.D.
control
PDB
N.D.
+0.6
-0.7
-0.7
N.D.
plant
Norland
N.D.
-0.3
-0.4
+0.0
N.D.
plant
Upstate
N.D.
-0.3
-0.2
-0.1
N.D.
plant
Upstate
N.D.
-0.3
-0.1
-0.2
N.D.
carbon source
M9+glycerol
N.D.
-0.2
-0.3
-0.1
N.D.
carbon source
M9+glycerol
N.D.
-0.0
-0.2
-0.3
N.D.
control
LB
N.D.
-0.1
-0.2
-0.2
N.D.
plant
Upstate
N.D.
+0.1
-0.4
+0.0
N.D.
control
LB
N.D.
+0.1
-0.2
-0.0
N.D.
plant
Atlantic
N.D.
-0.3
+0.1
+0.0
N.D.
plant
Norland
N.D.
+0.2
-0.1
-0.1
N.D.
carbon source
M9+glycerol
N.D.
+0.3
-0.2
-0.0
N.D.
carbon source
M9+polygalacturonate
N.D.
-0.2
-0.0
+0.5
N.D.
plant
Upstate
N.D.
+0.1
+0.3
-0.2
N.D.
plant
Upstate
N.D.
-0.2
+0.3
+0.3
N.D.
carbon source
M9+polygalacturonate
N.D.
+0.1
-0.1
+0.4
N.D.
carbon source
M9+polygalacturonate
N.D.
+0.2
-0.1
+0.3
N.D.
plant
Norland
N.D.
+0.2
+0.0
+0.2
N.D.
plant
Atlantic
N.D.
+0.3
+0.1
+0.2
N.D.
plant
Norland
N.D.
+0.3
+0.2
+0.1
N.D.
carbon source
M9+sucrose
N.D.
-0.2
+0.6
+0.6
N.D.
carbon source
M9+sucrose
N.D.
+0.1
+0.7
+0.4
N.D.
carbon source
M9+sucrose
N.D.
+0.5
+0.5
+0.3
N.D.
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