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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS20455 and HGI48_RS20460 are separated by 9 nucleotides
HGI48_RS20460 and HGI48_RS20465 are separated by 317 nucleotides
HGI48_RS20465 and HGI48_RS20470 are separated by 159 nucleotides
HGI48_RS20470 and HGI48_RS20475 are separated by 65 nucleotides
HGI48_RS20455: HGI48_RS20455 - ATP-dependent protease subunit HslV, at 4,573,752 to 4,574,282
_RS20455
HGI48_RS20460: HGI48_RS20460 - HslU--HslV peptidase ATPase subunit, at 4,574,292 to 4,575,623
_RS20460
HGI48_RS20465: HGI48_RS20465 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 4,575,941 to 4,576,858
_RS20465
HGI48_RS20470: HGI48_RS20470 - ribonuclease E activity regulator RraA, at 4,577,018 to 4,577,503
_RS20470
HGI48_RS20475: HGI48_RS20475 - cell division protein ZapB, at 4,577,569 to 4,577,811
_RS20475
Group
Condition
HGI48
_RS20455
HGI48
_RS20460
HGI48
_RS20465
HGI48
_RS20470
HGI48
_RS20475
plant
Atlantic
-0.3
-0.3
-0.9
-0.3
-0.7
control
PDB
-0.8
+0.1
-0.1
-0.3
-0.8
plant
Upstate
-0.6
+0.1
-0.5
-0.2
-0.4
plant
Upstate
-0.1
-0.2
-0.4
-0.3
-0.7
plant
Norland
-0.3
-0.2
-0.3
-0.0
-0.7
plant
Atlantic
-0.4
-0.4
-0.9
+0.2
-0.0
plant
Norland
-0.5
+0.4
-0.9
-0.2
-0.0
control
PDB
-0.5
-0.2
+0.3
+0.1
-1.0
plant
Upstate
-1.2
+0.1
-0.2
-0.3
+0.3
plant
Norland
-0.1
+0.1
-1.1
-0.1
-0.0
plant
Atlantic
-0.8
+0.0
-0.4
-0.0
-0.0
plant
Atlantic
+0.1
-0.1
-1.1
-0.4
+0.3
control
PDB
-0.4
-0.2
+0.0
+0.1
-0.7
plant
Upstate
-0.3
+0.1
-0.5
-0.1
-0.1
control
PDB
-0.6
-0.1
+0.1
-0.0
-0.3
carbon source
M9+glycerol
-0.4
+0.3
+0.1
-0.5
-0.4
plant
Norland
-1.0
+0.4
-0.4
+0.1
+0.1
control
PDB
-0.8
+0.3
+0.2
+0.4
-0.8
carbon source
M9+glycerol
-0.6
+0.3
+0.3
+0.1
-0.6
carbon source
M9+polygalacturonate
-0.6
-0.5
+0.5
+0.5
-0.1
control
LB
-0.4
+0.1
+0.2
+0.4
-0.2
plant
Upstate
+0.1
+0.4
-0.1
+0.5
-0.5
carbon source
M9+glycerol
+0.5
-0.1
+0.3
-0.2
+0.0
carbon source
M9+sucrose
-0.2
+0.9
-0.2
-0.2
+0.2
carbon source
M9+glycerol
+0.3
+0.4
+0.1
+0.6
-0.5
plant
Atlantic
+1.0
+0.2
-0.0
-0.2
-0.1
carbon source
M9+sucrose
+0.3
+0.8
+0.0
-0.1
+0.2
carbon source
M9+sucrose
+1.1
+0.8
+0.1
-0.7
+0.0
carbon source
M9+polygalacturonate
+0.1
+0.3
+0.3
+0.7
+0.1
carbon source
M9+polygalacturonate
+0.4
+0.7
+0.2
+0.6
+0.6
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