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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS20165 and HGI48_RS20170 overlap by 4 nucleotides
HGI48_RS20170 and HGI48_RS20175 overlap by 8 nucleotides
HGI48_RS20175 and HGI48_RS20180 overlap by 4 nucleotides
HGI48_RS20180 and HGI48_RS20185 overlap by 1 nucleotides
HGI48_RS20165: HGI48_RS20165 - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 4,503,136 to 4,503,873
_RS20165
HGI48_RS20170: HGI48_RS20170 - ECA oligosaccharide polymerase, at 4,503,870 to 4,505,210
_RS20170
HGI48_RS20175: HGI48_RS20175 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 4,505,203 to 4,506,288
_RS20175
HGI48_RS20180: HGI48_RS20180 - lipid III flippase WzxE, at 4,506,285 to 4,507,535
_RS20180
HGI48_RS20185: HGI48_RS20185 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,507,535 to 4,508,665
_RS20185
Group
Condition
HGI48
_RS20165
HGI48
_RS20170
HGI48
_RS20175
HGI48
_RS20180
HGI48
_RS20185
carbon source
M9+glycerol
-0.5
-0.5
-1.1
-0.7
+0.0
carbon source
M9+glycerol
-0.2
-0.6
-0.6
-0.8
-0.3
carbon source
M9+glycerol
-0.5
-0.5
-0.5
-0.5
-0.0
carbon source
M9+glycerol
+0.1
-0.6
-0.6
-0.6
-0.3
carbon source
M9+glycerol
-0.5
-0.5
-0.2
-0.3
-0.4
carbon source
M9+glycerol
-0.3
-0.8
-0.3
-0.4
-0.2
carbon source
M9+polygalacturonate
-0.4
-0.2
-0.9
-0.0
-0.3
carbon source
M9+polygalacturonate
-0.5
-0.4
-0.6
+0.0
-0.1
carbon source
M9+sucrose
-0.5
-0.4
-0.1
-0.1
-0.2
plant
Atlantic
+0.1
-0.3
-0.7
-0.3
-0.0
carbon source
M9+polygalacturonate
-0.2
+0.0
-0.6
-0.1
-0.1
plant
Norland
-0.2
-0.1
+0.0
-0.4
-0.1
plant
Upstate
-0.2
-0.2
-0.2
-0.2
+0.0
control
PDB
-0.1
-0.1
-0.3
-0.1
-0.2
plant
Upstate
-0.1
-0.1
-0.3
-0.1
-0.1
plant
Atlantic
+0.0
-0.2
-0.2
-0.1
-0.2
plant
Atlantic
-0.2
+0.0
-0.1
-0.5
+0.2
plant
Upstate
+0.1
-0.1
-0.2
-0.2
-0.0
plant
Upstate
-0.5
-0.1
-0.2
+0.1
+0.2
plant
Norland
-0.3
-0.2
-0.1
-0.0
+0.1
plant
Atlantic
-0.1
-0.3
-0.1
+0.2
-0.1
plant
Norland
-0.2
-0.1
+0.1
+0.1
-0.2
control
PDB
+0.3
-0.0
-0.1
-0.5
+0.1
carbon source
M9+sucrose
+0.4
-0.0
+0.0
-0.4
-0.2
control
LB
-0.1
-0.2
+0.2
-0.3
+0.1
plant
Atlantic
+0.0
+0.3
+0.0
-0.4
+0.0
carbon source
M9+sucrose
-0.4
+0.1
+0.5
+0.0
+0.1
control
PDB
-0.1
+0.3
+0.2
-0.2
+0.0
control
PDB
+0.0
+0.2
+0.3
-0.2
+0.2
plant
Upstate
+0.1
-0.0
+0.3
-0.1
+0.2
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