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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19800 and HGI48_RS19805 are separated by 157 nucleotides
HGI48_RS19805 and HGI48_RS19810 are separated by 191 nucleotides
HGI48_RS19810 and HGI48_RS19815 are separated by 325 nucleotides
HGI48_RS19815 and HGI48_RS19820 are separated by 75 nucleotides
HGI48_RS19800: HGI48_RS19800 - DeoR/GlpR family transcriptional regulator, at 4,425,295 to 4,426,053
_RS19800
HGI48_RS19805: HGI48_RS19805 - rhomboid family intramembrane serine protease GlpG, at 4,426,211 to 4,427,035
_RS19805
HGI48_RS19810: HGI48_RS19810 - thiosulfate sulfurtransferase GlpE, at 4,427,227 to 4,427,547
_RS19810
HGI48_RS19815: HGI48_RS19815 - glycerol-3-phosphate dehydrogenase, at 4,427,873 to 4,429,372
_RS19815
HGI48_RS19820: HGI48_RS19820 - DUF4276 family protein, at 4,429,448 to 4,429,714
_RS19820
Group
Condition
HGI48
_RS19800
HGI48
_RS19805
HGI48
_RS19810
HGI48
_RS19815
HGI48
_RS19820
control
LB
-1.1
-0.4
-0.0
-1.1
+0.1
carbon source
M9+glycerol
+0.2
+0.1
-0.0
-2.9
+0.3
carbon source
M9+sucrose
-0.9
+0.2
-0.2
-1.1
-0.3
carbon source
M9+glycerol
-0.4
+0.0
-0.2
-1.7
+0.2
carbon source
M9+sucrose
-0.7
-0.2
-0.1
-0.3
-0.3
control
LB
-0.5
+0.1
-0.0
-0.9
-0.2
carbon source
M9+glycerol
-0.0
-0.1
+0.1
-0.9
-0.5
carbon source
M9+polygalacturonate
+0.7
-0.0
+0.0
-2.1
-0.1
control
LB
-0.5
-0.1
-0.4
-0.5
+0.1
carbon source
M9+glycerol
+0.3
-0.1
+0.3
-1.8
+0.2
carbon source
M9+sucrose
+0.2
+0.1
-0.6
-0.5
-0.1
carbon source
M9+polygalacturonate
+0.5
+0.2
-0.1
-1.9
+0.6
plant
Norland
-0.0
-0.1
+0.1
-0.9
+0.3
carbon source
M9+polygalacturonate
+0.3
+0.3
+0.2
-1.8
+0.5
carbon source
M9+glycerol
+0.6
-0.3
+0.1
-1.2
+0.5
plant
Norland
+0.2
-0.1
+0.3
+0.2
-0.6
control
PDB
-0.8
-0.3
-0.0
+1.4
-0.2
plant
Atlantic
+0.2
-0.1
+0.7
-0.6
+0.1
plant
Atlantic
-0.3
-0.0
+0.1
-0.3
+0.8
plant
Norland
-0.4
-0.2
-0.1
+1.0
+0.1
plant
Upstate
+0.3
+0.4
-0.2
-0.4
+0.3
plant
Upstate
+0.3
-0.0
+0.5
-0.5
+0.2
control
PDB
+0.1
-0.1
+0.5
+0.7
-0.3
control
PDB
-0.1
+0.1
+0.4
+1.2
-0.7
control
PDB
-0.1
-0.1
+0.2
+1.0
+0.1
plant
Upstate
+0.3
+0.2
-0.2
+0.2
+0.6
plant
Atlantic
+0.3
+0.0
-0.0
+0.7
+0.1
plant
Atlantic
+0.0
+0.5
+0.2
+0.3
+0.4
control
PDB
+0.6
-0.3
+0.2
+1.3
-0.0
control
PDB
+0.6
-0.2
+0.6
+1.1
-0.1
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