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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19680 and HGI48_RS19685 are separated by 482 nucleotides
HGI48_RS19685 and HGI48_RS19690 are separated by 17 nucleotides
HGI48_RS19690 and HGI48_RS19695 overlap by 4 nucleotides
HGI48_RS19695 and HGI48_RS19700 overlap by 1 nucleotides
HGI48_RS19680: HGI48_RS19680 - shikimate kinase AroK, at 4,393,927 to 4,394,448
_RS19680
HGI48_RS19685: HGI48_RS19685 - DNA uptake porin HofQ, at 4,394,931 to 4,396,235
_RS19685
HGI48_RS19690: HGI48_RS19690 - DUF2531 family protein, at 4,396,253 to 4,396,609
_RS19690
HGI48_RS19695: HGI48_RS19695 - hypothetical protein, at 4,396,606 to 4,397,157
_RS19695
HGI48_RS19700: HGI48_RS19700 - PilN domain-containing protein, at 4,397,157 to 4,397,717
_RS19700
Group
Condition
HGI48
_RS19680
HGI48
_RS19685
HGI48
_RS19690
HGI48
_RS19695
HGI48
_RS19700
plant
Atlantic
N.D.
+0.3
-3.0
-0.3
-0.7
plant
Atlantic
N.D.
-0.5
-0.5
+0.1
-1.5
control
PDB
N.D.
-0.1
-1.0
-0.1
+0.1
control
LB
N.D.
-0.1
-0.6
-0.1
-0.3
plant
Norland
N.D.
+0.2
-1.1
+0.1
-0.2
control
PDB
N.D.
+0.0
-0.3
-0.4
-0.2
plant
Norland
N.D.
-0.0
-0.1
-0.0
-0.5
control
PDB
N.D.
-0.1
-0.9
-0.0
+0.4
plant
Norland
N.D.
+0.1
-1.3
+0.2
+0.6
carbon source
M9+glycerol
N.D.
+0.1
+0.0
+0.2
-0.7
carbon source
M9+sucrose
N.D.
+0.1
+0.2
+0.2
-0.9
plant
Upstate
N.D.
-0.1
-0.7
+0.2
+0.2
plant
Norland
N.D.
-0.0
-0.4
-0.1
+0.2
plant
Upstate
N.D.
+0.1
-0.6
-0.0
+0.3
carbon source
M9+polygalacturonate
N.D.
-0.0
+1.0
-0.2
-1.0
carbon source
M9+glycerol
N.D.
-0.2
-0.2
-0.4
+0.5
plant
Atlantic
N.D.
+0.5
-0.5
-0.0
-0.1
carbon source
M9+glycerol
N.D.
+0.1
-0.6
+0.1
+0.4
control
PDB
N.D.
-0.0
+0.5
-0.3
-0.1
plant
Atlantic
N.D.
+0.4
-0.5
+0.2
+0.0
carbon source
M9+glycerol
N.D.
-0.0
+0.0
-0.2
+0.4
carbon source
M9+glycerol
N.D.
+0.0
-0.2
+0.1
+0.3
carbon source
M9+sucrose
N.D.
-0.1
+0.6
+0.2
-0.6
plant
Norland
N.D.
-0.0
-0.7
-0.2
+1.1
carbon source
M9+polygalacturonate
N.D.
+0.2
+1.0
-0.4
-0.4
carbon source
M9+sucrose
N.D.
+0.2
+0.8
-0.4
-0.1
plant
Upstate
N.D.
+0.2
+0.3
-0.1
+0.3
plant
Atlantic
N.D.
-0.0
+0.4
+0.3
+0.1
carbon source
M9+polygalacturonate
N.D.
+0.2
+0.5
+0.3
+0.3
plant
Atlantic
N.D.
+0.1
+1.4
+0.2
-0.1
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