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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19605 and HGI48_RS19610 overlap by 4 nucleotides
HGI48_RS19610 and HGI48_RS19615 overlap by 4 nucleotides
HGI48_RS19615 and HGI48_RS19620 are separated by 1 nucleotides
HGI48_RS19620 and HGI48_RS19625 are separated by 459 nucleotides
HGI48_RS19605: HGI48_RS19605 - MFS transporter, at 4,376,093 to 4,377,235
_RS19605
HGI48_RS19610: HGI48_RS19610 - histidine kinase, at 4,377,232 to 4,378,521
_RS19610
HGI48_RS19615: HGI48_RS19615 - gamma-aminobutyric-acid receptor subunit beta, at 4,378,518 to 4,379,549
_RS19615
HGI48_RS19620: HGI48_RS19620 - glutamate decarboxylase, at 4,379,551 to 4,380,921
_RS19620
HGI48_RS19625: HGI48_RS19625 - polysaccharide lyase, at 4,381,381 to 4,382,508
_RS19625
Group
Condition
HGI48
_RS19605
HGI48
_RS19610
HGI48
_RS19615
HGI48
_RS19620
HGI48
_RS19625
plant
Atlantic
-0.5
-0.1
-0.1
-0.4
+0.0
plant
Upstate
-0.4
-0.1
-0.1
-0.2
-0.2
plant
Atlantic
-0.2
-0.1
-0.1
-0.3
-0.1
plant
Norland
-0.2
-0.0
-0.1
-0.6
+0.1
plant
Norland
-0.3
-0.0
+0.0
-0.3
-0.2
plant
Norland
-0.1
-0.1
-0.1
-0.3
-0.1
carbon source
M9+polygalacturonate
-0.0
-0.1
-0.4
-0.0
-0.1
plant
Atlantic
-0.7
-0.1
+0.3
-0.2
+0.2
plant
Upstate
-0.5
-0.0
+0.1
-0.1
-0.1
carbon source
M9+sucrose
+0.0
-0.2
-0.1
-0.0
-0.2
carbon source
M9+polygalacturonate
-0.2
-0.1
-0.2
+0.2
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.2
+0.0
-0.1
control
LB
-0.1
+0.0
-0.1
-0.2
+0.1
carbon source
M9+glycerol
-0.3
-0.1
+0.0
+0.1
-0.1
control
PDB
-0.3
+0.1
+0.0
-0.2
+0.1
plant
Upstate
-0.1
-0.1
+0.2
-0.4
+0.1
plant
Norland
-0.2
-0.0
+0.1
-0.1
+0.0
plant
Atlantic
+0.1
-0.2
+0.2
-0.4
+0.0
carbon source
M9+glycerol
-0.1
-0.1
+0.2
+0.0
-0.1
carbon source
M9+sucrose
+0.1
-0.1
-0.1
+0.1
-0.1
plant
Norland
-0.3
+0.1
+0.1
-0.1
-0.1
control
LB
+0.0
-0.0
+0.0
-0.3
+0.1
plant
Norland
-0.1
+0.0
+0.2
-0.1
-0.1
carbon source
M9+glycerol
-0.2
+0.0
+0.2
-0.1
+0.1
carbon source
M9+glycerol
-0.3
+0.1
+0.4
+0.1
-0.2
plant
Atlantic
-0.1
+0.0
+0.2
-0.1
+0.2
control
PDB
-0.2
+0.0
+0.1
+0.2
+0.1
plant
Atlantic
+0.2
-0.0
+0.2
-0.2
+0.2
carbon source
M9+sucrose
+0.2
+0.1
-0.0
+0.1
+0.0
carbon source
M9+glycerol
-0.2
-0.2
+0.2
+0.8
-0.2
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