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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19585 and HGI48_RS19590 are separated by 288 nucleotides
HGI48_RS19590 and HGI48_RS19595 are separated by 107 nucleotides
HGI48_RS19595 and HGI48_RS19600 are separated by 483 nucleotides
HGI48_RS19600 and HGI48_RS19605 are separated by 212 nucleotides
HGI48_RS19585: HGI48_RS19585 - helix-turn-helix transcriptional regulator, at 4,371,943 to 4,372,260
_RS19585
HGI48_RS19590: HGI48_RS19590 - hypothetical protein, at 4,372,549 to 4,372,698
_RS19590
HGI48_RS19595: HGI48_RS19595 - PatA/PatG family cyanobactin maturation protease, at 4,372,806 to 4,374,770
_RS19595
HGI48_RS19600: HGI48_RS19600 - glycoside hydrolase family 19 protein, at 4,375,254 to 4,375,880
_RS19600
HGI48_RS19605: HGI48_RS19605 - MFS transporter, at 4,376,093 to 4,377,235
_RS19605
Group
Condition
HGI48
_RS19585
HGI48
_RS19590
HGI48
_RS19595
HGI48
_RS19600
HGI48
_RS19605
plant
Atlantic
-0.6
N.D.
-0.3
-0.6
-0.5
carbon source
M9+polygalacturonate
-0.4
N.D.
+0.0
-0.9
-0.2
plant
Atlantic
-0.4
N.D.
-0.1
+0.1
-0.7
carbon source
M9+glycerol
-0.6
N.D.
-0.0
-0.4
-0.1
plant
Atlantic
-0.8
N.D.
-0.2
+0.1
+0.1
plant
Norland
+0.0
N.D.
-0.3
-0.3
-0.3
control
PDB
-0.1
N.D.
-0.1
-0.3
-0.3
carbon source
M9+glycerol
-0.0
N.D.
-0.0
-0.4
-0.3
plant
Norland
-0.5
N.D.
-0.2
+0.0
-0.1
plant
Upstate
+0.4
N.D.
-0.1
-0.5
-0.5
control
PDB
-1.1
N.D.
+0.1
+0.5
-0.1
plant
Atlantic
-0.2
N.D.
+0.2
-0.3
-0.2
plant
Atlantic
+0.2
N.D.
-0.1
-0.5
-0.1
plant
Atlantic
+0.2
N.D.
+0.0
-0.6
+0.2
carbon source
M9+polygalacturonate
+0.4
N.D.
+0.2
-0.7
-0.0
carbon source
M9+glycerol
+0.3
N.D.
+0.2
-0.3
-0.3
plant
Norland
-0.2
N.D.
-0.2
+0.3
-0.1
plant
Upstate
+0.2
N.D.
-0.2
-0.3
+0.1
carbon source
M9+sucrose
+0.1
N.D.
+0.1
-0.4
+0.1
carbon source
M9+polygalacturonate
+0.5
N.D.
+0.2
-0.5
-0.1
plant
Norland
+0.4
N.D.
+0.0
-0.2
-0.2
plant
Upstate
+0.6
N.D.
-0.3
-0.1
+0.0
control
PDB
+0.4
N.D.
+0.2
-0.4
-0.2
carbon source
M9+glycerol
+0.5
N.D.
-0.0
-0.2
-0.2
control
LB
+0.2
N.D.
-0.1
+0.2
+0.1
plant
Upstate
+0.3
N.D.
+0.1
+0.3
-0.1
carbon source
M9+glycerol
+0.4
N.D.
+0.2
+0.3
-0.2
plant
Norland
+0.5
N.D.
+0.5
+0.0
-0.2
carbon source
M9+sucrose
+0.8
N.D.
+0.2
-0.2
+0.2
control
PDB
+0.4
N.D.
+0.2
+0.4
+0.0
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