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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19550 and HGI48_RS19555 are separated by 133 nucleotides
HGI48_RS19555 and HGI48_RS19560 are separated by 17 nucleotides
HGI48_RS19560 and HGI48_RS19565 are separated by 388 nucleotides
HGI48_RS19565 and HGI48_RS19570 are separated by 88 nucleotides
HGI48_RS19550: HGI48_RS19550 - YheU family protein, at 4,365,332 to 4,365,562
_RS19550
HGI48_RS19555: HGI48_RS19555 - phosphoribulokinase, at 4,365,696 to 4,366,565
_RS19555
HGI48_RS19560: HGI48_RS19560 - OsmC family protein, at 4,366,583 to 4,367,020
_RS19560
HGI48_RS19565: HGI48_RS19565 - cAMP-activated global transcriptional regulator CRP, at 4,367,409 to 4,368,041
_RS19565
HGI48_RS19570: HGI48_RS19570 - aspartate aminotransferase family protein, at 4,368,130 to 4,369,353
_RS19570
Group
Condition
HGI48
_RS19550
HGI48
_RS19555
HGI48
_RS19560
HGI48
_RS19565
HGI48
_RS19570
plant
Atlantic
-0.0
-0.5
-0.7
N.D.
-0.2
carbon source
M9+polygalacturonate
-0.5
+1.1
-0.2
N.D.
-1.6
carbon source
M9+sucrose
-0.3
+1.7
-0.4
N.D.
-2.1
control
PDB
-0.5
+0.1
-0.3
N.D.
-0.3
plant
Upstate
+0.2
-0.5
-0.2
N.D.
-0.3
carbon source
M9+glycerol
+0.0
+0.1
+0.5
N.D.
-1.4
plant
Norland
-0.6
-0.4
+0.4
N.D.
-0.1
carbon source
M9+polygalacturonate
-0.3
+0.9
+0.3
N.D.
-1.6
control
PDB
-0.0
+0.0
-0.5
N.D.
-0.1
control
PDB
-0.5
-0.1
+0.2
N.D.
-0.3
plant
Norland
+0.1
-0.3
-0.4
N.D.
-0.1
plant
Upstate
+0.1
-0.6
-0.1
N.D.
+0.1
control
LB
+0.1
-0.1
-0.5
N.D.
+0.0
plant
Upstate
-0.2
-0.3
-0.0
N.D.
+0.0
carbon source
M9+glycerol
-0.5
+0.6
-0.3
N.D.
-0.3
carbon source
M9+glycerol
-0.2
+0.3
-0.1
N.D.
-0.4
plant
Atlantic
-0.0
+0.1
-0.4
N.D.
-0.0
plant
Atlantic
+0.0
-0.1
-0.4
N.D.
+0.2
carbon source
M9+glycerol
+0.1
+0.5
-0.6
N.D.
-0.2
plant
Atlantic
-0.7
+0.1
-0.2
N.D.
+0.6
plant
Norland
-0.1
-0.2
+0.2
N.D.
+0.1
carbon source
M9+polygalacturonate
-0.5
+1.3
+0.2
N.D.
-1.1
carbon source
M9+sucrose
-0.5
+1.6
+0.4
N.D.
-1.5
plant
Atlantic
+0.2
+0.1
-0.4
N.D.
+0.2
control
LB
+0.1
+0.2
-0.2
N.D.
+0.0
plant
Atlantic
+0.5
-0.2
-0.0
N.D.
-0.1
carbon source
M9+glycerol
-0.0
+0.4
+0.4
N.D.
-0.3
carbon source
M9+glycerol
-0.2
+0.7
+0.2
N.D.
-0.2
carbon source
M9+sucrose
-0.5
+2.1
+0.4
N.D.
-1.1
plant
Norland
+0.4
-0.1
+1.0
N.D.
-0.0
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