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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19140 and HGI48_RS19145 are separated by 75 nucleotides
HGI48_RS19145 and HGI48_RS19150 are separated by 23 nucleotides
HGI48_RS19150 and HGI48_RS19155 are separated by 303 nucleotides
HGI48_RS19155 and HGI48_RS19160 are separated by 422 nucleotides
HGI48_RS19140: HGI48_RS19140 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 4,299,144 to 4,300,916
_RS19140
HGI48_RS19145: HGI48_RS19145 - isocitrate lyase, at 4,300,992 to 4,302,299
_RS19145
HGI48_RS19150: HGI48_RS19150 - malate synthase A, at 4,302,323 to 4,303,921
_RS19150
HGI48_RS19155: HGI48_RS19155 - homoserine O-succinyltransferase, at 4,304,225 to 4,305,154
_RS19155
HGI48_RS19160: HGI48_RS19160 - 5S ribosomal RNA, at 4,305,577 to 4,305,692
_RS19160
Group
Condition
HGI48
_RS19140
HGI48
_RS19145
HGI48
_RS19150
HGI48
_RS19155
HGI48
_RS19160
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.7
-1.8
N.D.
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.2
-2.3
N.D.
carbon source
M9+sucrose
+0.0
-0.2
-0.0
-2.3
N.D.
carbon source
M9+sucrose
+0.1
-0.2
-0.2
-2.1
N.D.
carbon source
M9+polygalacturonate
-0.1
+0.3
-0.1
-2.2
N.D.
carbon source
M9+sucrose
+0.2
-0.1
+0.1
-2.1
N.D.
carbon source
M9+glycerol
-0.0
+0.0
+0.1
-1.7
N.D.
plant
Atlantic
+0.0
-0.4
+0.0
-1.1
N.D.
carbon source
M9+glycerol
+0.2
-0.1
-0.0
-0.6
N.D.
carbon source
M9+glycerol
+0.2
+0.0
+0.0
-0.7
N.D.
plant
Atlantic
+0.1
+0.2
-0.2
-0.6
N.D.
plant
Norland
+0.0
-0.1
+0.1
-0.4
N.D.
plant
Norland
+0.0
-0.0
+0.0
-0.4
N.D.
plant
Norland
-0.1
-0.1
-0.0
-0.1
N.D.
carbon source
M9+glycerol
-0.0
+0.0
+0.2
-0.5
N.D.
carbon source
M9+glycerol
-0.0
+0.0
+0.1
-0.4
N.D.
plant
Upstate
-0.1
+0.0
+0.3
-0.4
N.D.
plant
Atlantic
-0.1
+0.1
-0.0
-0.2
N.D.
control
PDB
+0.1
+0.1
-0.2
-0.0
N.D.
plant
Atlantic
-0.1
+0.2
+0.1
-0.3
N.D.
plant
Atlantic
-0.2
+0.2
+0.2
-0.4
N.D.
carbon source
M9+glycerol
-0.1
-0.1
+0.4
-0.3
N.D.
plant
Norland
+0.1
+0.3
-0.3
-0.2
N.D.
plant
Norland
-0.0
-0.1
+0.1
+0.1
N.D.
plant
Norland
+0.1
+0.1
-0.1
-0.1
N.D.
control
PDB
-0.1
-0.0
+0.0
+0.2
N.D.
plant
Atlantic
-0.0
+0.2
+0.0
-0.1
N.D.
plant
Upstate
+0.2
+0.1
-0.0
-0.0
N.D.
control
PDB
-0.0
+0.2
+0.1
-0.0
N.D.
plant
Upstate
+0.1
+0.0
+0.2
+0.1
N.D.
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