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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19065 and HGI48_RS19070 are separated by 12 nucleotides
HGI48_RS19070 and HGI48_RS19075 are separated by 14 nucleotides
HGI48_RS19075 and HGI48_RS19080 are separated by 350 nucleotides
HGI48_RS19080 and HGI48_RS19085 are separated by 155 nucleotides
HGI48_RS19065: HGI48_RS19065 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,280,671 to 4,281,405
_RS19065
HGI48_RS19070: HGI48_RS19070 - fumarate reductase subunit FrdC, at 4,281,418 to 4,281,813
_RS19070
HGI48_RS19075: HGI48_RS19075 - fumarate reductase subunit FrdD, at 4,281,828 to 4,282,184
_RS19075
HGI48_RS19080: HGI48_RS19080 - DMT family protein, at 4,282,535 to 4,282,888
_RS19080
HGI48_RS19085: HGI48_RS19085 - elongation factor P, at 4,283,044 to 4,283,610
_RS19085
Group
Condition
HGI48
_RS19065
HGI48
_RS19070
HGI48
_RS19075
HGI48
_RS19080
HGI48
_RS19085
plant
Norland
-0.5
-1.4
-1.3
-0.1
N.D.
plant
Atlantic
-0.3
-1.2
-0.8
+0.0
N.D.
plant
Upstate
+0.0
-1.1
-0.5
-0.2
N.D.
plant
Atlantic
-0.2
-0.7
-0.8
+0.1
N.D.
plant
Upstate
-0.1
-0.6
-0.4
-0.2
N.D.
plant
Atlantic
+0.4
-1.4
+0.1
-0.4
N.D.
plant
Upstate
-0.4
-0.9
-0.0
+0.2
N.D.
plant
Norland
-0.3
-0.7
+0.1
-0.1
N.D.
control
PDB
+0.1
-0.9
+0.2
-0.3
N.D.
plant
Upstate
+0.1
-0.7
-0.4
+0.1
N.D.
plant
Norland
-0.1
-0.3
-0.4
-0.1
N.D.
plant
Upstate
-0.1
-0.3
-0.1
-0.2
N.D.
plant
Norland
-0.2
-0.2
-0.1
-0.2
N.D.
plant
Norland
-0.0
-0.5
+0.1
-0.3
N.D.
control
LB
+0.0
-0.5
+0.0
-0.2
N.D.
carbon source
M9+glycerol
+0.1
-0.4
-0.1
-0.2
N.D.
control
LB
-0.1
-0.6
+0.3
-0.2
N.D.
carbon source
M9+glycerol
-0.4
-0.1
+0.1
-0.1
N.D.
plant
Norland
+0.2
-0.1
-0.4
-0.1
N.D.
plant
Atlantic
-0.3
-0.6
+0.7
-0.0
N.D.
control
PDB
+0.1
-0.4
+0.3
-0.1
N.D.
carbon source
M9+glycerol
+0.1
-0.4
+0.7
-0.4
N.D.
carbon source
M9+glycerol
-0.1
-0.2
+0.7
-0.4
N.D.
carbon source
M9+sucrose
+0.1
+0.1
+0.4
-0.2
N.D.
carbon source
M9+polygalacturonate
+0.3
-0.7
+0.6
+0.1
N.D.
carbon source
M9+glycerol
+0.3
-0.5
+1.0
-0.4
N.D.
carbon source
M9+polygalacturonate
-0.1
-0.6
+0.9
+0.1
N.D.
control
PDB
+0.3
-0.2
+0.5
-0.1
N.D.
carbon source
M9+sucrose
+0.2
-0.3
+0.6
+0.0
N.D.
plant
Atlantic
+0.6
+0.5
+0.4
+0.0
N.D.
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