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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19055 and HGI48_RS19060 are separated by 470 nucleotides
HGI48_RS19060 and HGI48_RS19065 overlap by 8 nucleotides
HGI48_RS19065 and HGI48_RS19070 are separated by 12 nucleotides
HGI48_RS19070 and HGI48_RS19075 are separated by 14 nucleotides
HGI48_RS19055: HGI48_RS19055 - elongation factor P--(R)-beta-lysine ligase, at 4,277,434 to 4,278,411
_RS19055
HGI48_RS19060: HGI48_RS19060 - fumarate reductase (quinol) flavoprotein subunit, at 4,278,882 to 4,280,678
_RS19060
HGI48_RS19065: HGI48_RS19065 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,280,671 to 4,281,405
_RS19065
HGI48_RS19070: HGI48_RS19070 - fumarate reductase subunit FrdC, at 4,281,418 to 4,281,813
_RS19070
HGI48_RS19075: HGI48_RS19075 - fumarate reductase subunit FrdD, at 4,281,828 to 4,282,184
_RS19075
Group
Condition
HGI48
_RS19055
HGI48
_RS19060
HGI48
_RS19065
HGI48
_RS19070
HGI48
_RS19075
plant
Atlantic
-2.3
-0.3
-0.2
-0.7
-0.8
plant
Upstate
-2.2
-0.3
+0.1
-0.7
-0.4
plant
Upstate
-1.2
-0.4
+0.0
-1.1
-0.5
plant
Atlantic
-0.4
-0.3
-0.3
-1.2
-0.8
plant
Norland
+0.6
-0.3
-0.5
-1.4
-1.3
plant
Norland
-1.7
-0.4
-0.3
-0.7
+0.1
plant
Atlantic
-1.9
-0.3
-0.2
-0.2
-0.2
plant
Upstate
-1.4
-0.1
-0.4
-0.9
-0.0
plant
Upstate
-0.6
-0.4
-0.1
-0.6
-0.4
plant
Norland
-1.5
-0.2
-0.2
-0.2
-0.1
plant
Norland
-1.4
-0.2
+0.2
-0.1
-0.4
plant
Atlantic
-3.1
-0.2
+0.6
+0.5
+0.4
control
PDB
-1.9
+0.1
+0.1
-0.1
-0.0
control
LB
-1.2
+0.1
+0.0
-0.5
+0.0
plant
Upstate
-0.8
-0.2
-0.1
-0.3
-0.1
control
LB
-1.2
-0.0
-0.1
-0.6
+0.3
control
PDB
-1.0
+0.1
+0.1
-0.9
+0.2
plant
Atlantic
-1.2
-0.0
-0.3
-0.6
+0.7
plant
Norland
-0.4
-0.1
-0.1
-0.3
-0.4
carbon source
M9+polygalacturonate
-1.4
+0.3
-0.1
+0.3
-0.1
carbon source
M9+polygalacturonate
-1.4
+0.2
-0.1
-0.6
+0.9
carbon source
M9+sucrose
-1.0
+0.1
-0.0
+0.2
-0.2
carbon source
M9+glycerol
-1.2
+0.1
-0.1
-0.2
+0.7
carbon source
M9+glycerol
-1.3
+0.1
+0.3
-0.5
+1.0
plant
Atlantic
+0.8
-0.2
+0.4
-1.4
+0.1
carbon source
M9+polygalacturonate
-0.3
+0.0
+0.3
-0.7
+0.6
carbon source
M9+glycerol
-0.5
+0.2
-0.0
+0.2
+0.3
control
PDB
+0.5
+0.2
+0.1
-0.4
+0.3
carbon source
M9+glycerol
+1.0
+0.1
+0.1
-0.4
+0.7
carbon source
M9+sucrose
+1.1
+0.2
+0.2
-0.3
+0.6
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