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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19035 and HGI48_RS19040 are separated by 135 nucleotides
HGI48_RS19040 and HGI48_RS19045 are separated by 86 nucleotides
HGI48_RS19045 and HGI48_RS19050 are separated by 29 nucleotides
HGI48_RS19050 and HGI48_RS19055 are separated by 86 nucleotides
HGI48_RS19035: HGI48_RS19035 - oligoribonuclease, at 4,271,284 to 4,271,826
_RS19035
HGI48_RS19040: HGI48_RS19040 - small ribosomal subunit biogenesis GTPase RsgA, at 4,271,962 to 4,273,011
_RS19040
HGI48_RS19045: HGI48_RS19045 - phosphatidylserine decarboxylase, at 4,273,098 to 4,273,994
_RS19045
HGI48_RS19050: HGI48_RS19050 - miniconductance mechanosensitive channel MscM, at 4,274,024 to 4,277,347
_RS19050
HGI48_RS19055: HGI48_RS19055 - elongation factor P--(R)-beta-lysine ligase, at 4,277,434 to 4,278,411
_RS19055
Group
Condition
HGI48
_RS19035
HGI48
_RS19040
HGI48
_RS19045
HGI48
_RS19050
HGI48
_RS19055
plant
Atlantic
N.D.
N.D.
N.D.
-0.7
-3.1
plant
Atlantic
N.D.
N.D.
N.D.
+0.3
-2.3
control
PDB
N.D.
N.D.
N.D.
-0.2
-1.9
plant
Upstate
N.D.
N.D.
N.D.
+0.1
-2.2
plant
Atlantic
N.D.
N.D.
N.D.
+0.2
-1.9
plant
Norland
N.D.
N.D.
N.D.
+0.0
-1.7
plant
Upstate
N.D.
N.D.
N.D.
-0.2
-1.4
plant
Norland
N.D.
N.D.
N.D.
-0.0
-1.5
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
-0.1
-1.4
control
LB
N.D.
N.D.
N.D.
-0.2
-1.2
control
LB
N.D.
N.D.
N.D.
-0.2
-1.2
plant
Norland
N.D.
N.D.
N.D.
+0.0
-1.4
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
+0.2
-1.4
plant
Atlantic
N.D.
N.D.
N.D.
+0.0
-1.2
plant
Upstate
N.D.
N.D.
N.D.
+0.1
-1.2
carbon source
M9+glycerol
N.D.
N.D.
N.D.
+0.2
-1.3
carbon source
M9+glycerol
N.D.
N.D.
N.D.
+0.1
-1.2
control
PDB
N.D.
N.D.
N.D.
-0.0
-1.0
control
PDB
N.D.
N.D.
N.D.
-0.3
-0.5
plant
Upstate
N.D.
N.D.
N.D.
-0.0
-0.8
carbon source
M9+sucrose
N.D.
N.D.
N.D.
+0.2
-1.0
control
LB
N.D.
N.D.
N.D.
-0.4
-0.3
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
-0.3
-0.3
carbon source
M9+glycerol
N.D.
N.D.
N.D.
+0.1
-0.5
plant
Upstate
N.D.
N.D.
N.D.
+0.2
-0.6
control
PDB
N.D.
N.D.
N.D.
-0.2
+0.5
plant
Atlantic
N.D.
N.D.
N.D.
-0.2
+0.8
plant
Norland
N.D.
N.D.
N.D.
+0.1
+0.6
carbon source
M9+glycerol
N.D.
N.D.
N.D.
-0.3
+1.0
carbon source
M9+sucrose
N.D.
N.D.
N.D.
+0.2
+1.1
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