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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19010 and HGI48_RS19015 are separated by 137 nucleotides
HGI48_RS19015 and HGI48_RS19020 are separated by 79 nucleotides
HGI48_RS19020 and HGI48_RS19025 are separated by 312 nucleotides
HGI48_RS19025 and HGI48_RS19030 are separated by 209 nucleotides
HGI48_RS19010: HGI48_RS19010 - LysR family transcriptional regulator, at 4,267,391 to 4,268,293
_RS19010
HGI48_RS19015: HGI48_RS19015 - SDR family oxidoreductase, at 4,268,431 to 4,269,177
_RS19015
HGI48_RS19020: HGI48_RS19020 - glutathione S-transferase family protein, at 4,269,257 to 4,269,931
_RS19020
HGI48_RS19025: HGI48_RS19025 - transposase, at 4,270,244 to 4,270,818
_RS19025
HGI48_RS19030: HGI48_RS19030 - tRNA-Gly, at 4,271,028 to 4,271,103
_RS19030
Group
Condition
HGI48
_RS19010
HGI48
_RS19015
HGI48
_RS19020
HGI48
_RS19025
HGI48
_RS19030
control
PDB
-0.2
+0.2
-0.2
-0.5
-1.6
control
PDB
-0.5
+0.1
+0.0
-0.0
-1.6
control
PDB
-0.2
-0.1
+0.0
+0.0
-1.6
control
PDB
-0.4
-0.2
+0.2
-0.3
-1.0
carbon source
M9+sucrose
-0.1
-0.1
+0.2
-1.0
-0.5
carbon source
M9+polygalacturonate
-0.1
-0.2
-0.3
-0.4
-0.4
control
PDB
-0.1
+0.1
+0.0
+0.3
-1.4
carbon source
M9+glycerol
-0.1
-0.0
-0.1
-1.1
+0.2
carbon source
M9+polygalacturonate
-0.3
-0.0
-0.1
+0.0
-0.6
control
PDB
-0.1
+0.2
+0.0
+0.4
-1.4
control
LB
-0.0
+0.1
-0.0
-0.1
-0.4
plant
Atlantic
+0.1
+0.3
-0.3
-0.3
-0.2
carbon source
M9+polygalacturonate
-0.2
-0.1
+0.1
+0.3
-0.4
carbon source
M9+sucrose
-0.0
-0.2
+0.1
+0.3
-0.4
plant
Atlantic
+0.1
+0.3
-0.0
-0.5
+0.0
plant
Norland
-0.0
+0.2
+0.3
-0.0
-0.4
control
LB
+0.0
+0.1
+0.2
+0.0
-0.3
carbon source
M9+glycerol
+0.0
-0.1
+0.5
-0.3
-0.2
plant
Upstate
+0.1
+0.1
+0.5
-0.4
-0.3
carbon source
M9+sucrose
-0.2
+0.0
+0.3
+0.3
-0.4
plant
Norland
+0.0
+0.2
+0.0
-0.4
+0.2
plant
Atlantic
+0.0
+0.3
+0.5
-0.4
-0.1
plant
Norland
+0.0
+0.0
+0.3
+0.2
-0.2
control
LB
-0.1
+0.2
-0.0
+0.5
-0.1
plant
Atlantic
+0.2
-0.0
+0.1
+0.6
-0.3
plant
Upstate
-0.0
+0.0
+0.2
-0.7
+1.1
plant
Norland
+0.1
+0.2
-0.1
+0.2
+0.3
carbon source
M9+glycerol
-0.0
+0.1
+0.2
+0.2
+0.4
plant
Upstate
-0.2
-0.0
+0.3
-0.0
+1.0
plant
Atlantic
+0.0
-0.1
+0.3
+0.6
+0.3
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