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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS19000 and HGI48_RS19005 are separated by 349 nucleotides
HGI48_RS19005 and HGI48_RS19010 are separated by 119 nucleotides
HGI48_RS19010 and HGI48_RS19015 are separated by 137 nucleotides
HGI48_RS19015 and HGI48_RS19020 are separated by 79 nucleotides
HGI48_RS19000: HGI48_RS19000 - amino acid adenylation domain-containing protein, at 4,265,138 to 4,266,673
_RS19000
HGI48_RS19005: HGI48_RS19005 - transposase, at 4,267,023 to 4,267,271
_RS19005
HGI48_RS19010: HGI48_RS19010 - LysR family transcriptional regulator, at 4,267,391 to 4,268,293
_RS19010
HGI48_RS19015: HGI48_RS19015 - SDR family oxidoreductase, at 4,268,431 to 4,269,177
_RS19015
HGI48_RS19020: HGI48_RS19020 - glutathione S-transferase family protein, at 4,269,257 to 4,269,931
_RS19020
Group
Condition
HGI48
_RS19000
HGI48
_RS19005
HGI48
_RS19010
HGI48
_RS19015
HGI48
_RS19020
carbon source
M9+polygalacturonate
-0.1
N.D.
-0.1
-0.2
-0.3
control
PDB
-0.2
N.D.
-0.2
-0.1
+0.0
control
PDB
-0.1
N.D.
-0.5
+0.1
+0.0
carbon source
M9+polygalacturonate
-0.0
N.D.
-0.3
-0.0
-0.1
control
PDB
-0.0
N.D.
-0.4
-0.2
+0.2
carbon source
M9+glycerol
-0.1
N.D.
-0.3
+0.1
+0.1
carbon source
M9+sucrose
-0.4
N.D.
-0.2
+0.0
+0.3
control
PDB
+0.0
N.D.
-0.2
+0.2
-0.2
carbon source
M9+glycerol
+0.2
N.D.
-0.1
-0.2
+0.0
plant
Upstate
-0.1
N.D.
+0.1
+0.1
-0.1
control
PDB
-0.1
N.D.
-0.1
+0.2
+0.0
plant
Upstate
+0.0
N.D.
-0.2
-0.0
+0.3
carbon source
M9+polygalacturonate
+0.2
N.D.
-0.2
-0.1
+0.1
plant
Atlantic
-0.0
N.D.
+0.1
+0.3
-0.3
carbon source
M9+sucrose
+0.2
N.D.
-0.1
-0.1
+0.2
plant
Norland
+0.1
N.D.
+0.1
+0.2
-0.1
plant
Atlantic
-0.1
N.D.
+0.1
+0.3
-0.0
control
PDB
+0.2
N.D.
-0.1
+0.1
+0.0
carbon source
M9+glycerol
-0.1
N.D.
-0.0
+0.1
+0.2
plant
Atlantic
+0.3
N.D.
-0.1
+0.0
+0.1
plant
Norland
+0.1
N.D.
+0.0
+0.0
+0.3
control
LB
+0.1
N.D.
+0.0
+0.1
+0.2
plant
Upstate
+0.2
N.D.
-0.0
+0.0
+0.2
plant
Norland
+0.0
N.D.
-0.0
+0.2
+0.3
plant
Atlantic
+0.3
N.D.
+0.0
-0.1
+0.3
plant
Upstate
+0.2
N.D.
-0.0
+0.0
+0.2
plant
Norland
+0.2
N.D.
+0.0
+0.1
+0.2
carbon source
M9+glycerol
+0.3
N.D.
+0.0
-0.1
+0.5
plant
Upstate
+0.1
N.D.
+0.1
+0.1
+0.5
plant
Atlantic
+0.3
N.D.
+0.0
+0.3
+0.5
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