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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18955 and HGI48_RS18960 are separated by 11 nucleotides
HGI48_RS18960 and HGI48_RS18965 overlap by 4 nucleotides
HGI48_RS18965 and HGI48_RS18970 are separated by 708 nucleotides
HGI48_RS18970 and HGI48_RS18975 are separated by 54 nucleotides
HGI48_RS18955: HGI48_RS18955 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,255,968 to 4,258,076
_RS18955
HGI48_RS18960: HGI48_RS18960 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,258,088 to 4,259,407
_RS18960
HGI48_RS18965: HGI48_RS18965 - efflux RND transporter periplasmic adaptor subunit, at 4,259,404 to 4,260,207
_RS18965
HGI48_RS18970: HGI48_RS18970 - helix-turn-helix transcriptional regulator, at 4,260,916 to 4,261,488
_RS18970
HGI48_RS18975: HGI48_RS18975 - thioesterase, at 4,261,543 to 4,262,256
_RS18975
Group
Condition
HGI48
_RS18955
HGI48
_RS18960
HGI48
_RS18965
HGI48
_RS18970
HGI48
_RS18975
carbon source
M9+sucrose
-0.0
+0.1
-0.3
-1.7
-0.0
carbon source
M9+polygalacturonate
-0.1
+0.1
-0.7
-0.9
+0.2
carbon source
M9+sucrose
+0.1
+0.2
-0.3
-1.1
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.4
-0.6
-0.0
control
PDB
-0.0
+0.2
-1.1
-0.3
+0.3
plant
Atlantic
+0.2
-0.1
-0.8
-0.2
+0.0
carbon source
M9+polygalacturonate
-0.0
-0.3
+0.2
-0.5
+0.1
carbon source
M9+glycerol
-0.2
+0.1
-0.2
-0.1
+0.1
carbon source
M9+sucrose
+0.1
+0.3
+0.1
-0.9
+0.0
plant
Upstate
-0.1
+0.3
-0.4
-0.2
+0.0
carbon source
M9+glycerol
-0.1
+0.2
-0.3
-0.3
+0.1
plant
Norland
-0.0
+0.1
-0.3
+0.1
-0.2
control
PDB
-0.2
+0.2
-0.4
+0.0
+0.1
plant
Upstate
-0.1
+0.3
-0.6
+0.2
+0.1
control
PDB
-0.1
-0.1
+0.4
-0.3
+0.1
carbon source
M9+glycerol
+0.1
-0.0
+0.2
-0.3
+0.1
plant
Atlantic
-0.1
+0.0
+0.3
-0.2
+0.0
control
LB
+0.1
+0.3
-0.6
+0.2
+0.1
plant
Atlantic
+0.1
+0.1
-0.4
+0.2
+0.2
plant
Upstate
-0.2
+0.2
-0.2
+0.3
+0.1
control
PDB
-0.2
+0.2
+0.0
+0.1
+0.2
plant
Norland
+0.1
+0.1
+0.2
+0.2
-0.1
plant
Norland
+0.1
+0.2
-0.1
+0.2
+0.1
carbon source
M9+glycerol
-0.2
+0.2
+0.6
-0.3
+0.1
control
PDB
-0.1
+0.0
+0.2
+0.1
+0.3
plant
Norland
+0.1
+0.2
+0.1
+0.0
+0.3
plant
Norland
+0.0
+0.1
+0.2
+0.3
+0.2
control
PDB
+0.0
+0.0
+0.5
+0.4
+0.1
plant
Atlantic
-0.1
+0.9
+0.2
-0.2
+0.2
plant
Atlantic
+0.2
+0.6
-0.2
+0.3
+0.2
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