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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18855 and HGI48_RS18860 are separated by 35 nucleotides
HGI48_RS18860 and HGI48_RS18865 are separated by 464 nucleotides
HGI48_RS18865 and HGI48_RS18870 overlap by 4 nucleotides
HGI48_RS18870 and HGI48_RS18875 are separated by 81 nucleotides
HGI48_RS18855: HGI48_RS18855 - cysteine desulfurase NifS, at 4,227,295 to 4,228,557
_RS18855
HGI48_RS18860: HGI48_RS18860 - Fe-S cluster assembly protein NifU, at 4,228,593 to 4,229,438
_RS18860
HGI48_RS18865: HGI48_RS18865 - glycoside hydrolase family protein, at 4,229,903 to 4,230,707
_RS18865
HGI48_RS18870: HGI48_RS18870 - hypothetical protein, at 4,230,704 to 4,231,108
_RS18870
HGI48_RS18875: HGI48_RS18875 - Hcp family type VI secretion system effector, at 4,231,190 to 4,231,669
_RS18875
Group
Condition
HGI48
_RS18855
HGI48
_RS18860
HGI48
_RS18865
HGI48
_RS18870
HGI48
_RS18875
carbon source
M9+glycerol
-0.2
-1.1
-0.8
-0.3
-0.6
plant
Atlantic
-0.1
-1.2
-0.1
-0.2
+0.2
control
PDB
+0.1
+0.3
-0.5
-0.5
-0.4
plant
Atlantic
+0.5
-1.6
-0.2
-0.1
+0.4
control
PDB
+0.1
-0.3
-0.2
-0.1
-0.4
carbon source
M9+sucrose
+0.0
-0.5
-0.5
-0.2
+0.3
control
PDB
-0.2
-0.3
-0.3
+0.3
-0.5
carbon source
M9+glycerol
-0.1
+0.3
-0.7
+0.0
-0.3
plant
Atlantic
-0.2
+0.1
-0.5
-0.5
+0.4
control
PDB
-0.1
-0.1
-0.4
+0.3
-0.3
plant
Norland
-0.0
+0.2
-0.2
-0.7
+0.3
carbon source
M9+glycerol
+0.1
-0.9
-0.3
+0.7
+0.1
control
PDB
+0.3
-0.2
-0.4
+0.5
-0.2
plant
Norland
+0.0
-0.6
-0.2
+0.5
+0.2
plant
Upstate
-0.0
-0.6
+0.0
+0.5
+0.1
carbon source
M9+sucrose
+0.2
-0.2
-0.3
+0.4
+0.1
control
LB
-0.0
-0.4
+0.1
+0.5
-0.0
carbon source
M9+polygalacturonate
-0.1
+0.4
-0.3
+0.7
-0.3
carbon source
M9+polygalacturonate
+0.2
-0.4
+0.1
+0.2
+0.3
plant
Atlantic
-0.3
-0.2
-0.4
+1.1
+0.4
control
LB
-0.1
+0.3
-0.2
+0.4
+0.1
plant
Upstate
+0.2
+0.3
-0.7
+0.2
+0.4
plant
Upstate
-0.3
+0.4
-0.6
+0.6
+0.4
plant
Atlantic
-0.1
-0.4
+0.6
+0.3
+0.0
plant
Norland
-0.0
-0.3
+0.2
+0.5
+0.3
plant
Norland
+0.1
+0.0
-0.1
+0.7
+0.2
control
LB
-0.1
-0.1
+0.1
+0.8
+0.2
plant
Norland
+0.1
+0.2
-0.3
+0.4
+0.8
plant
Norland
+0.4
+0.2
+0.1
+0.5
+0.2
carbon source
M9+glycerol
-0.3
+0.5
+0.4
+0.7
-0.0
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