Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS18855 and HGI48_RS18860 are separated by 35 nucleotidesHGI48_RS18860 and HGI48_RS18865 are separated by 464 nucleotidesHGI48_RS18865 and HGI48_RS18870 overlap by 4 nucleotidesHGI48_RS18870 and HGI48_RS18875 are separated by 81 nucleotides HGI48_RS18855: HGI48_RS18855 - cysteine desulfurase NifS, at 4,227,295 to 4,228,557 _RS18855 HGI48_RS18860: HGI48_RS18860 - Fe-S cluster assembly protein NifU, at 4,228,593 to 4,229,438 _RS18860 HGI48_RS18865: HGI48_RS18865 - glycoside hydrolase family protein, at 4,229,903 to 4,230,707 _RS18865 HGI48_RS18870: HGI48_RS18870 - hypothetical protein, at 4,230,704 to 4,231,108 _RS18870 HGI48_RS18875: HGI48_RS18875 - Hcp family type VI secretion system effector, at 4,231,190 to 4,231,669 _RS18875
Group Condition HGI48_RS18855 HGI48_RS18860 HGI48_RS18865 HGI48_RS18870 HGI48_RS18875
carbon source M9+glycerol -0.2 -1.1 -0.8 -0.3 -0.6
plant Atlantic -0.1 -1.2 -0.1 -0.2 +0.2
control PDB +0.1 +0.3 -0.5 -0.5 -0.4
plant Atlantic +0.5 -1.6 -0.2 -0.1 +0.4
control PDB +0.1 -0.3 -0.2 -0.1 -0.4
carbon source M9+sucrose +0.0 -0.5 -0.5 -0.2 +0.3
control PDB -0.2 -0.3 -0.3 +0.3 -0.5
carbon source M9+glycerol -0.1 +0.3 -0.7 +0.0 -0.3
plant Atlantic -0.2 +0.1 -0.5 -0.5 +0.4
control PDB -0.1 -0.1 -0.4 +0.3 -0.3
plant Norland -0.0 +0.2 -0.2 -0.7 +0.3
carbon source M9+glycerol +0.1 -0.9 -0.3 +0.7 +0.1
control PDB +0.3 -0.2 -0.4 +0.5 -0.2
plant Norland +0.0 -0.6 -0.2 +0.5 +0.2
plant Upstate -0.0 -0.6 +0.0 +0.5 +0.1
carbon source M9+sucrose +0.2 -0.2 -0.3 +0.4 +0.1
control LB -0.0 -0.4 +0.1 +0.5 -0.0
carbon source M9+polygalacturonate -0.1 +0.4 -0.3 +0.7 -0.3
carbon source M9+polygalacturonate +0.2 -0.4 +0.1 +0.2 +0.3
plant Atlantic -0.3 -0.2 -0.4 +1.1 +0.4
control LB -0.1 +0.3 -0.2 +0.4 +0.1
plant Upstate +0.2 +0.3 -0.7 +0.2 +0.4
plant Upstate -0.3 +0.4 -0.6 +0.6 +0.4
plant Atlantic -0.1 -0.4 +0.6 +0.3 +0.0
plant Norland -0.0 -0.3 +0.2 +0.5 +0.3
plant Norland +0.1 +0.0 -0.1 +0.7 +0.2
control LB -0.1 -0.1 +0.1 +0.8 +0.2
plant Norland +0.1 +0.2 -0.3 +0.4 +0.8
plant Norland +0.4 +0.2 +0.1 +0.5 +0.2
carbon source M9+glycerol -0.3 +0.5 +0.4 +0.7 -0.0
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