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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18745 and HGI48_RS18750 are separated by 151 nucleotides
HGI48_RS18750 and HGI48_RS18755 are separated by 345 nucleotides
HGI48_RS18755 and HGI48_RS18760 overlap by 4 nucleotides
HGI48_RS18760 and HGI48_RS18765 are separated by 187 nucleotides
HGI48_RS18745: HGI48_RS18745 - MarR family transcriptional regulator, at 4,202,913 to 4,203,383
_RS18745
HGI48_RS18750: HGI48_RS18750 - p-aminobenzoyl-glutamate transporter, at 4,203,535 to 4,205,058
_RS18750
HGI48_RS18755: HGI48_RS18755 - amidohydrolase, at 4,205,404 to 4,206,855
_RS18755
HGI48_RS18760: HGI48_RS18760 - M20 family metallo-hydrolase, at 4,206,852 to 4,208,156
_RS18760
HGI48_RS18765: HGI48_RS18765 - LysR family transcriptional regulator, at 4,208,344 to 4,209,240
_RS18765
Group
Condition
HGI48
_RS18745
HGI48
_RS18750
HGI48
_RS18755
HGI48
_RS18760
HGI48
_RS18765
carbon source
M9+sucrose
-0.8
-0.2
+0.2
+0.2
+0.1
carbon source
M9+sucrose
-0.4
+0.2
-0.1
+0.2
-0.2
carbon source
M9+sucrose
-0.5
-0.2
+0.0
+0.2
+0.1
plant
Atlantic
+0.3
-0.2
+0.2
-0.2
-0.1
plant
Atlantic
-0.1
+0.1
+0.2
-0.3
+0.2
carbon source
M9+glycerol
+0.9
-0.0
-0.3
-0.3
-0.0
carbon source
M9+polygalacturonate
+0.1
-0.1
+0.5
-0.2
-0.1
carbon source
M9+polygalacturonate
-0.6
+0.1
+0.4
+0.2
+0.1
plant
Norland
+0.6
-0.1
-0.2
-0.1
+0.1
plant
Norland
+0.6
-0.1
+0.1
-0.4
+0.0
plant
Upstate
+0.4
-0.1
+0.1
-0.2
+0.1
plant
Norland
+0.5
-0.1
-0.0
+0.1
-0.0
carbon source
M9+glycerol
+0.6
+0.1
+0.1
-0.4
+0.0
plant
Atlantic
+0.5
-0.1
+0.3
-0.3
+0.2
plant
Norland
+0.3
-0.1
+0.3
-0.1
+0.1
carbon source
M9+glycerol
+1.0
+0.0
-0.1
-0.1
-0.3
plant
Norland
+0.5
+0.0
+0.2
-0.1
+0.1
plant
Atlantic
+0.6
+0.0
+0.2
-0.1
+0.2
carbon source
M9+glycerol
+1.4
-0.1
-0.1
-0.1
-0.1
control
PDB
+1.0
-0.1
-0.1
+0.0
+0.1
control
PDB
+0.7
-0.1
+0.1
+0.3
-0.0
plant
Norland
+0.7
+0.1
+0.2
-0.0
+0.0
control
PDB
+0.5
+0.2
+0.1
+0.1
+0.1
carbon source
M9+glycerol
+1.0
+0.0
+0.0
+0.1
-0.0
plant
Atlantic
+0.6
+0.2
+0.1
+0.1
+0.1
carbon source
M9+glycerol
+1.5
-0.2
+0.0
-0.1
+0.1
plant
Atlantic
+1.0
+0.2
+0.2
+0.0
-0.1
control
PDB
+1.4
-0.0
-0.2
+0.3
-0.0
control
PDB
+1.3
-0.2
+0.2
+0.1
+0.1
control
PDB
+1.2
+0.1
+0.2
-0.0
+0.2
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