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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18585 and HGI48_RS18590 are separated by 24 nucleotides
HGI48_RS18590 and HGI48_RS18595 are separated by 35 nucleotides
HGI48_RS18595 and HGI48_RS18600 are separated by 49 nucleotides
HGI48_RS18600 and HGI48_RS18605 are separated by 3 nucleotides
HGI48_RS18585: HGI48_RS18585 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 4,171,603 to 4,173,000
_RS18585
HGI48_RS18590: HGI48_RS18590 - phosphomannomutase CpsG, at 4,173,025 to 4,174,398
_RS18590
HGI48_RS18595: HGI48_RS18595 - GDP-mannose 4,6-dehydratase, at 4,174,434 to 4,175,552
_RS18595
HGI48_RS18600: HGI48_RS18600 - ABC transporter permease, at 4,175,602 to 4,176,390
_RS18600
HGI48_RS18605: HGI48_RS18605 - ABC transporter ATP-binding protein, at 4,176,394 to 4,177,125
_RS18605
Group
Condition
HGI48
_RS18585
HGI48
_RS18590
HGI48
_RS18595
HGI48
_RS18600
HGI48
_RS18605
plant
Upstate
-0.7
-0.3
-0.8
-1.7
-1.4
plant
Atlantic
-0.7
-0.4
-0.9
-1.6
-1.2
plant
Atlantic
-0.5
-0.4
-0.7
-2.1
-1.1
plant
Upstate
-0.6
-0.3
-0.7
-1.0
-2.1
plant
Upstate
-0.7
-0.6
-0.7
-1.4
-1.1
plant
Atlantic
-0.6
-0.5
-0.1
-1.9
-0.6
plant
Upstate
-0.4
-0.2
-0.5
-1.6
-0.8
plant
Norland
-0.2
-0.1
-0.1
-1.2
-1.1
plant
Upstate
-0.2
-0.0
+0.3
-0.8
-1.2
plant
Norland
+0.0
+0.3
+0.1
-1.1
-1.2
plant
Norland
+0.2
+0.2
-0.1
-1.1
-0.8
control
PDB
+0.1
-0.1
-0.5
+0.5
+0.5
plant
Norland
+0.6
+0.7
+0.3
-0.5
-0.6
plant
Norland
+0.6
+0.9
+0.4
-0.5
-0.8
control
PDB
-0.2
+0.0
-0.4
+0.6
+0.7
plant
Atlantic
+0.7
+0.7
+0.5
-0.0
-0.6
plant
Atlantic
+0.4
+0.7
+0.4
+0.5
-0.1
plant
Atlantic
+1.4
+1.2
+0.8
-0.7
-0.4
carbon source
M9+sucrose
+1.2
+1.4
+1.4
-0.5
-0.3
carbon source
M9+glycerol
+1.7
+2.0
+0.9
-0.3
-0.5
carbon source
M9+sucrose
+1.3
+1.3
+1.2
-0.0
+0.0
carbon source
M9+glycerol
+2.1
+2.2
+1.3
+0.1
-0.6
carbon source
M9+sucrose
+2.2
+2.0
+1.8
-0.1
-0.1
carbon source
M9+glycerol
+2.4
+2.5
+1.6
-0.5
-0.3
carbon source
M9+glycerol
+2.1
+2.2
+1.9
+0.1
+0.2
carbon source
M9+glycerol
+2.2
+2.4
+1.7
+0.1
+0.2
carbon source
M9+polygalacturonate
+2.1
+2.1
+2.0
+1.1
+1.6
carbon source
M9+polygalacturonate
+2.0
+1.9
+2.1
+1.8
+1.5
carbon source
M9+glycerol
+3.1
+3.1
+2.5
+1.2
+0.8
carbon source
M9+polygalacturonate
+3.9
+3.9
+3.8
+3.2
+3.2
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