Fitness for 5 genes in Dickeya dianthicola 67-19

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Top 30 experiments (either direction), sorted by average fitness

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500 ntHGI48_RS18550 and HGI48_RS18555 overlap by 8 nucleotidesHGI48_RS18555 and HGI48_RS18560 are separated by 27 nucleotidesHGI48_RS18560 and HGI48_RS18565 overlap by 4 nucleotidesHGI48_RS18565 and HGI48_RS18570 overlap by 4 nucleotides HGI48_RS18550: HGI48_RS18550 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 4,162,687 to 4,163,628 _RS18550 HGI48_RS18555: HGI48_RS18555 - DNA mismatch repair endonuclease MutL, at 4,163,621 to 4,165,549 _RS18555 HGI48_RS18560: HGI48_RS18560 - N-acetylmuramoyl-L-alanine amidase AmiB, at 4,165,577 to 4,167,250 _RS18560 HGI48_RS18565: HGI48_RS18565 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 4,167,247 to 4,167,729 _RS18565 HGI48_RS18570: HGI48_RS18570 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 4,167,726 to 4,169,267 _RS18570
Group Condition HGI48_RS18550 HGI48_RS18555 HGI48_RS18560 HGI48_RS18565 HGI48_RS18570
plant Atlantic -1.7 -0.3 -1.4 N.D. -0.5
plant Norland -1.8 +0.3 -0.5 N.D. -0.2
plant Upstate -0.9 -0.1 -0.8 N.D. -0.2
plant Upstate -1.2 -0.0 -0.1 N.D. -0.2
plant Atlantic -1.7 +0.0 +0.2 N.D. -0.0
control LB -0.9 -0.0 -0.2 N.D. -0.3
plant Upstate -1.0 -0.0 -0.1 N.D. -0.2
plant Norland -0.2 +0.1 -0.4 N.D. -0.6
plant Atlantic -0.3 +0.1 -0.5 N.D. -0.3
plant Atlantic -0.1 -0.2 -0.5 N.D. -0.0
plant Atlantic -0.1 +0.1 +0.1 N.D. -0.5
carbon source M9+sucrose -0.5 -0.1 +0.2 N.D. -0.1
plant Atlantic +0.2 +0.2 +0.1 N.D. -0.7
control PDB -0.2 +0.2 -0.3 N.D. +0.1
plant Upstate -0.9 +0.0 +1.0 N.D. -0.2
control LB -0.4 +0.1 +0.3 N.D. -0.1
plant Norland -0.6 +0.1 +0.5 N.D. +0.2
plant Norland -0.1 -0.1 +0.6 N.D. -0.3
plant Upstate +0.2 +0.1 +0.3 N.D. -0.3
carbon source M9+polygalacturonate +0.7 +0.1 -0.2 N.D. +0.1
control PDB +0.5 -0.0 +0.2 N.D. +0.2
carbon source M9+polygalacturonate +0.1 +0.0 +0.7 N.D. +0.2
carbon source M9+sucrose -0.2 +0.1 +0.8 N.D. +0.4
carbon source M9+glycerol +2.2 +0.2 -0.5 N.D. -0.6
carbon source M9+polygalacturonate +0.4 +0.2 +0.8 N.D. +0.1
carbon source M9+glycerol +1.8 +0.1 +0.0 N.D. -0.5
carbon source M9+glycerol +2.1 +0.3 +0.1 N.D. -0.5
carbon source M9+glycerol +2.2 +0.2 -0.1 N.D. +0.3
carbon source M9+glycerol +2.9 +0.4 -0.1 N.D. -0.1
carbon source M9+glycerol +3.2 +0.3 +0.4 N.D. -0.1
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