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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18460 and HGI48_RS18465 overlap by 8 nucleotides
HGI48_RS18465 and HGI48_RS18470 are separated by 176 nucleotides
HGI48_RS18470 and HGI48_RS18475 are separated by 116 nucleotides
HGI48_RS18475 and HGI48_RS18480 are separated by 110 nucleotides
HGI48_RS18460: HGI48_RS18460 - biosynthetic arginine decarboxylase, at 4,145,873 to 4,147,849
_RS18460
HGI48_RS18465: HGI48_RS18465 - hypothetical protein, at 4,147,842 to 4,148,000
_RS18465
HGI48_RS18470: HGI48_RS18470 - hypothetical protein, at 4,148,177 to 4,148,518
_RS18470
HGI48_RS18475: HGI48_RS18475 - methionine adenosyltransferase, at 4,148,635 to 4,149,789
_RS18475
HGI48_RS18480: HGI48_RS18480 - SprT family zinc-dependent metalloprotease, at 4,149,900 to 4,150,412
_RS18480
Group
Condition
HGI48
_RS18460
HGI48
_RS18465
HGI48
_RS18470
HGI48
_RS18475
HGI48
_RS18480
control
PDB
-0.4
-0.2
-0.2
N.D.
-0.2
plant
Atlantic
-0.1
-0.6
+0.6
N.D.
-0.9
carbon source
M9+glycerol
+0.0
-0.2
-0.5
N.D.
+0.1
control
PDB
-0.4
-0.3
+0.2
N.D.
-0.0
plant
Upstate
+0.1
-0.3
-0.3
N.D.
+0.1
control
PDB
-0.2
-0.3
-0.0
N.D.
+0.2
carbon source
M9+glycerol
+0.0
-0.6
-0.0
N.D.
+0.2
control
LB
+0.0
-0.4
+0.2
N.D.
-0.1
control
PDB
-0.4
+0.5
-0.1
N.D.
-0.2
control
PDB
-0.2
-0.4
-0.1
N.D.
+0.5
carbon source
M9+glycerol
+0.3
-0.4
+0.0
N.D.
-0.2
carbon source
M9+sucrose
+0.3
-0.5
-0.0
N.D.
+0.0
control
PDB
-0.3
-0.4
+0.2
N.D.
+0.4
carbon source
M9+glycerol
+0.2
+0.2
-0.0
N.D.
-0.3
control
LB
+0.1
-0.2
-0.1
N.D.
+0.3
carbon source
M9+sucrose
+0.4
-0.4
+0.2
N.D.
+0.1
plant
Norland
+0.3
-0.1
-0.3
N.D.
+0.3
plant
Norland
+0.2
-0.2
+0.5
N.D.
-0.2
plant
Atlantic
+0.4
+0.3
+0.4
N.D.
-0.6
plant
Norland
+0.3
-0.1
+0.1
N.D.
+0.3
plant
Norland
+0.0
-0.1
+0.5
N.D.
+0.2
plant
Atlantic
+0.2
+0.2
+0.3
N.D.
-0.0
plant
Atlantic
+0.3
+0.1
-0.1
N.D.
+0.4
plant
Upstate
+0.1
+0.1
+0.1
N.D.
+0.5
plant
Norland
+0.2
-0.1
+0.4
N.D.
+0.3
plant
Norland
+0.2
-0.1
+0.4
N.D.
+0.3
carbon source
M9+glycerol
+0.4
-0.2
+0.5
N.D.
+0.3
carbon source
M9+polygalacturonate
+0.5
+0.1
+0.2
N.D.
+0.7
carbon source
M9+polygalacturonate
+0.4
-0.2
+0.6
N.D.
+0.8
carbon source
M9+polygalacturonate
+0.7
+0.3
+0.3
N.D.
+0.6
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