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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18220 and HGI48_RS18225 are separated by 107 nucleotides
HGI48_RS18225 and HGI48_RS18230 overlap by 16 nucleotides
HGI48_RS18230 and HGI48_RS18235 are separated by 161 nucleotides
HGI48_RS18235 and HGI48_RS18240 are separated by 100 nucleotides
HGI48_RS18220: HGI48_RS18220 - type 3 dihydrofolate reductase, at 4,088,315 to 4,088,797
_RS18220
HGI48_RS18225: HGI48_RS18225 - threonine/serine exporter, at 4,088,905 to 4,089,375
_RS18225
HGI48_RS18230: HGI48_RS18230 - threonine/serine exporter ThrE family protein, at 4,089,360 to 4,090,142
_RS18230
HGI48_RS18235: HGI48_RS18235 - LysE family transporter, at 4,090,304 to 4,090,917
_RS18235
HGI48_RS18240: HGI48_RS18240 - carbamoyl-phosphate synthase large subunit, at 4,091,018 to 4,094,242
_RS18240
Group
Condition
HGI48
_RS18220
HGI48
_RS18225
HGI48
_RS18230
HGI48
_RS18235
HGI48
_RS18240
plant
Atlantic
N.D.
-0.2
-0.5
-0.6
-1.2
carbon source
M9+glycerol
N.D.
-0.2
+0.1
-0.9
-1.1
plant
Norland
N.D.
-0.2
-0.2
-0.2
-1.4
plant
Norland
N.D.
-0.0
-0.0
-0.4
-1.5
carbon source
M9+sucrose
N.D.
+0.1
+0.2
+0.2
-2.4
plant
Norland
N.D.
-0.0
-0.0
-0.1
-1.6
carbon source
M9+glycerol
N.D.
-0.1
+0.3
-0.3
-1.6
plant
Norland
N.D.
-0.0
-0.1
-0.4
-1.3
carbon source
M9+glycerol
N.D.
+0.2
+0.1
-0.5
-1.5
plant
Norland
N.D.
+0.3
-0.3
-0.2
-1.3
plant
Upstate
N.D.
+0.3
-0.4
+0.4
-1.8
plant
Norland
N.D.
-0.0
-0.1
+0.1
-1.4
plant
Upstate
N.D.
-0.0
-0.5
+0.6
-1.5
plant
Upstate
N.D.
-0.1
-0.1
-0.2
-1.0
carbon source
M9+sucrose
N.D.
-0.0
+0.3
+0.6
-2.2
plant
Atlantic
N.D.
-0.1
+0.1
-0.0
-1.2
plant
Upstate
N.D.
+0.0
-0.2
+0.0
-1.2
carbon source
M9+glycerol
N.D.
+0.1
+0.2
-0.1
-1.5
plant
Atlantic
N.D.
-0.5
+0.2
+0.2
-1.1
carbon source
M9+glycerol
N.D.
+0.3
+0.1
-0.2
-1.3
plant
Atlantic
N.D.
-0.3
+0.5
-0.3
-1.0
carbon source
M9+sucrose
N.D.
+0.0
+0.4
+0.9
-2.3
plant
Atlantic
N.D.
+0.0
-0.3
+0.2
-0.7
carbon source
M9+glycerol
N.D.
+0.1
-0.3
+0.5
-1.1
plant
Upstate
N.D.
-0.2
+0.1
+0.3
-0.8
control
PDB
N.D.
+0.1
-0.2
-0.5
+0.3
plant
Atlantic
N.D.
+0.2
+0.3
+0.8
-0.9
carbon source
M9+polygalacturonate
N.D.
+1.0
+1.3
+1.4
-2.3
carbon source
M9+polygalacturonate
N.D.
+1.1
+1.2
+1.3
-2.0
carbon source
M9+polygalacturonate
N.D.
+1.0
+1.5
+1.1
-1.6
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